| Id Trinity | TRINITY_DN47958_c0_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_422636 |
| Sequence | CTCTGGGTTATTTTGCAATCATCATTGATGTCGTAAATTTATGAACTTTCACTATCTGAGGCCCTGTTCAATTTAGTTCTGCTATCTTTTTTCGTCTTAT GTTAGTGCCCCTTCCCACCCCCAGAAATAATTAATTACCATTTTCAAATTTTCTTATTCTTGGGTTGATTTCTGATGAATTGGAAATAGTTCTGTAATGG CACCTTTTACTTCACCCTATTTGGATCAACAATTGATTTTGCTGAAACTACTTGGGTGTCATTGCACTGGCAATGGCATCATTTTTCTCAGGGTGAAGGA TGCATATCTTTGTAATAGAATAGGAGTTTAGAAGTTTAGTTTAAGCTTATTTAAAGTTTGCAGTGAAAAGAGAATCTTGTAATTTCTAGTGTGTAGTATT TCTGCACTTGCCTATATACATACACCAGCTTCCCTTGTTATCAGTTGCTATTTCTATTCTCTGTTCTCTCCCTCAGTTCATCTATCTTACACTTTCAATT AAACCTGTCTTGTCCATTTCTATTGACTTTTACTTGCTTTTACGAAGAAATATTATTGTCAAGATGTAGTTTTATTTTGGTTGGGTCTGCTTTATTTTTG TTTTGAAATGGCAGAGCCAATTTTGTGGAATAGACTACTTCCATGAGCTTGTAGACACGGAAAATTAGAAATAAATTTATAGAACTCAGGTACCAGGAAA GACATTAAAAAATTGAAAAAATATGAGCTTAACTTCTCTAACCCCTCCACTATCCACTGAACTTTGAGCCGTAATCTTAACAGACCCACTTTACTTCAAT CACATCATCTTCTTGAAAATTTCTTTCTATAAAATAAAGAAAAACTGATTCTGTTCTTGAGATTTGTTTAACTATTTAACTAAAGATACACACACAATCC TACATACATATATATGTATATAAATCCGTGTGCCATACCTGCACCCTAGATCCTGGAACAATTTCCGCACCCTGTACTGGATTCCAGTTCTGTATCCATA ACCATTCAACCTTGCTTCTTATTATATTCTTTTGGAGTTAAGGATGTGTTGATGCATGGTGATTGATAAAACTATGCAGTTTTTGCAAGTACTCATGTTT TGTCATTTTTCCTTTGTAAGAAAACTTCAAAGTTAATTGGTTAATGTTACTTCATTAAATTTGAAGTTTTACTGGTTCTGGGTCTTTGTCATATTTGGTT GCAGGTCCAAAAAATTCAGTTGTTAACACCAAATATAGGTGTTGTTTACAGTGGCATGGGTCCCGATTTCAGAGTTTTGGTTCGAAAAAGCAGGAAACAG GCTGTGCAGTATCAGCAACTATATCAAGTACAGTATCTCTTCATTTTCCATTCCTGTATATTTTTCATACTCGAGTTCTGTATATACTTGGTAAATAGGA TTCAGTTATAATGTTGTCAGCATCACTTTGATATTTTGAAATTGGAATTTTATTGATTTCCATGGTTTCAATTTTGTCATTAAGTAACACGTCTAAACGT AGTGTTCATTATATCTCATGCAAAGCATATCCATAGTATCATAAATTGCTATTCTGGCCTTCTGGGTGTTACCCATCTGCCTGGAGATTACTGGAGAATT TACCCATTCCCAAATATGACAAATACTCCATGCTCAAGTCCGCTATATTCTACCAACTGTCAGTATCAACAGTTCTAGATTTAATATCTTTGATAAGTAC CTGCCGTTGAAGTGCTATTATGTTGACAAGGATCAATTAATGGGTTTCAACTTCCAACTCTGTCTTTTTTCATCTGAATACCTGGGTACTTCAAAGAAGG AGAACCCTGTACCCGGAACCAATCCCTGTCACTCAACTTGTAAGGGAAGTTGCCGCTGTTATGCAGGAATTTACTCA BLAST |
| Tissue | pods |
| Gene name | LI_gene_156946; |
| Additional information | - |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_422636
| Blastp | - |
|---|---|
| Blastx | Proteasome subunit alpha type-2 from Oryza sativa with 96.97% of identity |
| Eggnog | The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (By similarity)(ENOG410XPQ8) |
| Kegg | Link to kegg annotations (4333000) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_006576205.2) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |