| Id Trinity | TRINITY_DN47958_c0_g1_i4 |
|---|---|
| Name Transcript | Ll_transcript_422639 |
| Sequence | CATAAACTGATCTATTTGTCCCACAAAATTTTCTTACCTTAATCATTCTTCACTGTTCTCTTCTAAACAAATTCGTAAAGGGTTTCCGTAACGTATCATG GGTGATAGTCAGTACTCGTTTTCTCTCACCACATTTAGCCCTTCTGGAAAGCTAGTTCAGATTGAACATGCTTTGACAGCTGTTGGGTCTGGACAAACAT CTCTGGGAATTAAAGCTGCAAATGGAGTTGTTATTGCAACAGAGAAGAAACTGCCATCTATATTGGTTGATGAAGCATCAGTCCAAAAAATTCAGTTATT GACACCAAATATAGGTGTTGTTTATAGGTTTGTCTCTTTCTACATGTTTGAATCATTTGAGTTAATTATATATTTATATCATTAATTCCTTGTAGTTTGA CGGTCCCTTCATATTATGGAATTTGGCGGTTTAGTTAGAATGCATTCTTAAACATGAGAGGCCTCTTAAGTTTCCTAGACACATAAAGATCTGAGACGGG AGGCAAGGCAGCTTCCTGAGGGAAGTGAGACACCAATTTTGAGGGAAAAGTTCTTTGTTGGACATAGAATAGAACTAGAAGTTCATGCTTGAAATTGATT AAATATTACATAGAAGATATTTTTTCAATCAAAATATTTTTCAATGTTTTGTACTTTTGTCACCGGCAAACTATTGCTTATGTGCTGTTGTAAATGTGAA GAAGTCTACCTAAATCAAACAATCATGTGGCAAACTAATGGTGTTTGTTGAGATATTAGCATATCATGGATAGGATTTCAATGAATTTTTTGAATGAGAT TTACTGGATTCAACCTACAAACTAGAGGTTTGATGATGATTTTTTTCCTCGGGGAGGGGTGGGGTGGATAGGATTTCAATGGATTCTTATAAAGAGATTT ACTGGATTCGTGCCACGACTTACAGGTTTGGCTAGGACATTTCTTTGGGAGGGCCGGGGAGTATGTGAGTTGTGAAATGGATGACTGCTTCTCTGGAAAC ACTTTGTTGTGAAATGAATACGGATGATGTTTAAAACTATATTCAAGCATTTAAAAAATGTCAATATATTAAACAACATAAATCACTTCCTTTCTGCTCT CTTTTTAATCTTTGAATGAGATAGACTGTCAAACTAAATTGTTTCCTTAGGTTTGTAAGTTTGTTTTTGTTTGAAACTTCATAAAACAGGGTGAGCCAGA CTATCTTTCTCATTGCATTTGAGCTTTTTGTACATGGATGTGGTTATGCCTCCTAACTAGTATGCAAGTATCTTCTTGCCTTAACCTAAATTTTGTCTTT GTTGTTTAGTGGCATGGGTCCCGATTTCCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGCTGTGCAGTATCAACAACTATATCAAGAACCAATCCCTGTT ACTCAACTTGTAAGGGAAGTTGCTGCTGTTATGCAGGAATTTACTCAGTCTGGTGGTGTTAGGCCTTTCGGAGTGTCCCTGCTGGTTGCTGGATTTGATG ACAAGGGACCACAATTATATCAGGTGGATCCATCAGGTTCATACTTCTCTTGGAAGGCTTCAGCCATGGGGAAAAATGTTTCTAATGCGAAGACATTTCT TGAGAAGAGGTATACCGATGATATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACCCTGAAGGAAGGCTTTGAGGGACAAATCTCTGGAAAAAAC ATTGAAATTGGCATAATTGGTGCTGACAAGAAGTTCAGGGTATTGACACCAGCTGAAATTGATGATTATTTGGGTGAAGTAGAGTAATGTGCAATGAAGA AATCCTCTATGTTCGTGAAGTAGAGTAATGTGCAATGAAGAAATCCT BLAST |
| Tissue | pods |
| Gene name | LI_gene_156946; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_422639
| Blastp | Proteasome subunit alpha type-2-A from Arabidopsis with 91.08% of identity |
|---|---|
| Blastx | Proteasome subunit alpha type-2-A from Arabidopsis with 90.62% of identity |
| Eggnog | The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (By similarity)(ENOG410XPQ8) |
| Kegg | Link to kegg annotations (AT1G16470) |
| CantataDB | Link to cantataDB annotations (CNT0001192) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019443721.1) |
| Pfam | Proteasome subunit (PF00227.25) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |