| Id Trinity | TRINITY_DN47958_c0_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_422640 |
| Sequence | AAAAACATAAAGGCCCATAAAAGCCCAATTAGAGTTGTGTTTTCTTGTTCGAGACGAATTGAAAAGTAGAAAAAGAATTTCATCAAACACCAAAAAAATT CAGTGTCTTAGTTCAGGTTTCTCTACCAAAAACATCATCGTTTTTTGTTCAGGTTTCCGTAACGTATCATGGGTGATAGTCAGTACTCGTTTTCTCTCAC CACATTTAGCCCTTCTGGAAAGCTAGTTCAGATTGAACATGCTTTGACAGCTGTTGGGTCTGGACAAACATCTCTGGGAATTAAAGCTGCAAATGGAGTT GTTATTGCAACAGAGAAGAAACTGCCATCTATATTGGTTGATGAAGCATCAGTCCAAAAAATTCAGTTATTGACACCAAATATAGGTGTTGTTTATAGGT TTGTCTCTTTCTACATGTTTGAATCATTTGAGTTAATTATATATTTATATCATTAATTCCTTGTAGTTTGACGGTCCCTTCATATTATGGAATTTGGCGG TTTAGTTAGAATGCATTCTTAAACATGAGAGGCCTCTTAAGTTTCCTAGACACATAAAGATCTGAGACGGGAGGCAAGGCAGCTTCCTGAGGGAAGTGAG ACACCAATTTTGAGGGAAAAGTTCTTTGTTGGACATAGAATAGAACTAGAAGTTCATGCTTGAAATTGATTAAATATTACATAGAAGATATTTTTTCAAT CAAAATATTTTTCAATGTTTTGTACTTTTGTCACCGGCAAACTATTGCTTATGTGCTGTTGTAAATGTGAAGAAGTCTACCTAAATCAAACAATCATGTG GCAAACTAATGGTGTTTGTTGAGATATTAGCATATCATGGATAGGATTTCAATGAATTTTTTGAATGAGATTTACTGGATTCAACCTACAAACTAGAGGT TTGATGATGATTTTTTTCCTCGGGGAGGGGTGGGGTGGATAGGATTTCAATGGATTCTTATAAAGAGATTTACTGGATTCGTGCCACGACTTACAGGTTT GGCTAGGACATTTCTTTGGGAGGGCCGGGGAGTATGTGAGTTGTGAAATGGATGACTGCTTCTCTGGAAACACTTTGTTGTGAAATGAATACGGATGATG TTTAAAACTATATTCAAGCATTTAAAAAATGTCAATATATTAAACAACATAAATCACTTCCTTTCTGCTCTCTTTTTAATCTTTGAATGAGATAGACTGT CAAACTAAATTGTTTCCTTAGGTTTGTAAGTTTGTTTTTGTTTGAAACTTCATAAAACAGGGTGAGCCAGACTATCTTTCTCATTGCATTTGAGCTTTTT GTACATGGATGTGGTTATGCCTCCTAACTAGTATGCAAGTATCTTCTTGCCTTAACCTAAATTTTGTCTTTGTTGTTTAGTGGCATGGGTCCCGATTTCC GAGTTTTGGTTCGAAAAAGCAGGAAACAAGCTGTGCAGTATCAACAACTATATCAAGAACCAATCCCTGTTACTCAACTTGTAAGGGAAGTTGCTGCTGT TATGCAGGAATTTACTCAGTCTGGTGGTGTTAGGCCTTTCGGAGTGTCCCTGCTGGTTGCTGGATTTGATGACAAGGGACCACAATTATATCAGGTGGAT CCATCAGGTTCATACTTCTCTTGGAAGGCTTCAGCCATGGGGAAAAATGTTTCTAATGCGAAGACATTTCTTGAGAAGAGGTATACCGATGATATGGAGC TTGATGATGCAGTCCACACAGCAATATTGACCCTGAAGGAAGGCTTTGAGGGACAAATCTCTGGAAAAAACATTGAAATTGGCATAATTGGTGCTGACAA GAAGTTCAGGGTATTGACACCAGCTGAAATTGATGATTATTTGGGTGAAGTAGAGTAATGTGCAATGAAGAAATCCTCTATGTTCGTGAAGTAGAGTAAT GTGCAATGAAGAAATCCT BLAST |
| Tissue | pods |
| Gene name | LI_gene_156946; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_422640
| Blastp | Proteasome subunit alpha type-2-A from Arabidopsis with 91.08% of identity |
|---|---|
| Blastx | Proteasome subunit alpha type-2-A from Arabidopsis with 90.62% of identity |
| Eggnog | The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (By similarity)(ENOG410XPQ8) |
| Kegg | Link to kegg annotations (AT1G16470) |
| CantataDB | Link to cantataDB annotations (CNT0001192) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019443721.1) |
| Pfam | Proteasome subunit (PF00227.25) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |