Ll_transcript_422643

• Id Trinity: TRINITY_DN47958_c0_g1_i8
• Name Transcript: Ll_transcript_422643
• Sequence: ATTCAGCAAAATCTCACTTCTGATTTCTTCTCTCTACCAATACCATTGTTTTTGCGTTAAGGGTATAATGGGTGATAGTCAATACTCCTTCTCTCTTACC ACATTTAGTCCTTCTGGAAAGCTTGTTCAGATTGAACATGCTTTGACAGCTGTTGGGTCCGGACAAACCTCTCTGGGAATTAAAGCTGCAAATGGAGTTG TTATTGCAACAGAGAAGAAACTACCATCTATTTTGGTTGATGAAGCATCAGTCCAAAAAGTTCAGTTATTGACACCAAATATAGGTGTTGTTTATAGTGG CATGGGTCCCGATTTCCGAGTTTTGGTTCGAAAAAGCAGGAAACAAGCTGTGCAGTATCAACAACTATATCAAGAACCAATCCCTGTTACTCAACTTGTA AGGGAAGTTGCTGCTGTTATGCAGGAATTTACTCAGTCTGGTGGTGTTAGGCCTTTCGGAGTGTCCCTGCTGGTTGCTGGATTTGATGACAAGGGACCAC AATTATATCAGGTGGATCCATCAGGTTCATACTTCTCTTGGAAGGCTTCAGCCATGGGGAAAAATGTTTCTAATGCGAAGACATTTCTTGAGAAGAGGTA TACCGATGATATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACCCTGAAGGAAGGCTTTGAGGGACAAATCTCTGGAAAAAACATTGAAATTGGC ATAATTGGTGCTGACAAGAAGTTCAGGGTATTGACACCAGCTGAAATTGATGATTATTTGGGTGAAGTAGAGTAATGTGCAATGAAGAAATCCTCTATGT TCGTGAAGTAGAGTAATGTGCAATGAAGAAATCCT
• Tissue: pods
• Gene name: LI_gene_156946;
• Additional information: details;

Expression of Ll_transcript_422643

FPKM

• PAB: 2.9
• PNAB: 11.1
• PS1: 12.8
• PS2: 8.3
• PS3: 18.8
• PW1: 11.5
• PW2: 13.4
• PW3: 6.9

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_422643

• Blastp: Proteasome subunit alpha type-2-A from Arabidopsis with 92.77% of identity
• Blastx: Proteasome subunit alpha type-2-A from Arabidopsis with 92.77% of identity
• Eggnog: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (By similarity)(ENOG410XPQ8)
• Kegg: Link to kegg annotations (AT1G16470)
• CantataDB: Link to cantataDB annotations (CNT0001192)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019443721.1)
• Pfam: Proteasome subunit A N-terminal signature (PF10584.8)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;