| Id Trinity | TRINITY_DN47960_c8_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_423168 |
| Sequence | TCCGACTGTGGCTTGTTGCTGAACACAATAAGGTGAGGAAAAAATGTTTCTTTTTTCTTAAAAGATTATTGGCTGGTTTATTATGAAATTTTCCTCTGGA CACATTGATTTTAGACATGCATAAAGTGCCTTATTATAATAAGACTGTAGATCTGTACATTGTATTTGGAAGTTATAATCTATGTATGACTTGAGTATTG TGTTGTTATTACTGCTCTAAGTACAAGAGTGGGTTTTATATTCTGAAAATGATAATGTGAACTTAATTGTCTTACACCGACCTTTCAAATTAACTAATTT CTCATGATATCATCCTAAGAACAACAGCTACTACTTATATCTTACAAATATTTTTTTTGAAAACAACTATGCACAGCTGTATAGTTTGAAATGGCAAGGC TGTTAAATGGTATCTAAAACTTATGATGTCATTTGGTCCATGTAGCCAACCCCACCTAGTGTGACTAACCGACTACAGTTTTTGTTGTTCTGTTTAATTT AGGTTTCATATCTATAACTTTTCAATATAATGTGTTCTAGATGTTTACTATGCTTTATTATTCTTGCTTCCATATTGTGGAATCTCATATTTTCTGAATC TACCTGTTATTGCAAATTATGTTGATTCTACAAGGTACTGATTTCCTGGTTTTATAAGTTAAGTATTTTGTCTCTCGAAACAAGGGAAAATGCATTTTTA AATGAGAATAAAGTATCTCATGGTATAAGGAGATAATGAGATAAGTTATATTCTTCTGTCAGTGGAAATATGTATGAAACTAAACAAAGTAGTAAAGGTG TCATACTTTTACTGGCTGGAGGAGATAAATTATCTCCTAGTATGAGGAGATATATTATCCTCTTCTTCTAAACCATTACACATTTGGATGCAATTAAGGT GAGCCTCAGCTCAAGGATAAGGTTGTTTGCCTTTGACTCGGAGGCCATAGGTTCAAATACTGGAAACTACCTCTTCGCTTGTAAGGGTAAGGCTGCTTAC GTATACCATCCCTAGATCTAACTAGATGGGAGCATTCTGCACCAGGTTGCCCTTTGTATAGGTTAGATGCAATTGCAAGCTCACACACTACAATAGTTTC TAAATTGATAATTCAAAACATGCTTGAGCTTTTCCTTTTGGTAAATTTCATGTCATTTGGATATGAGTTTGCAAATGCCTAATGGTGTACAATTTGAATC ATCTTGCCCTTTTGCTGCTACGTCCATTTTGTTACCAATTGTTGGCATTAGCAGTTTTAAACCTCTACGTGGTTTTTGCCCAAATAGGGGGGAAAAACCA GTCCAGCCCTACCTAATGCCTGTGAATTATGGTCATGTTCACCCAAATGGGCACTGAGCAGTCCTTTACACTTTGAAGGAAAATGGGAAATTTCGCTTCT CGATTAAGATGCAGATCATGCATAGAGAAGATTTCTTACTCTTGCTGTTGATCTGTAATGTTGATAACCTAATTTTGTGGTTATAGTTTAGTTTCCTATG ATGGACTTGCATGTTTACTGTTACTGTGTATTTTTATATGATGTAGGTGGATGCTGTAGTCTACCTGGTTGATGCATTTGACAAGGAAAGATTTCCAGAA TCGAAGAGGGAACTTGATGCTCTTCTTTCTGATGAATCACTCGCAAACGTACCCTTCCTTATATTGGGAAACAAGATAGACATACCTTATGCTGCCTCCG AGGATGAGCTACGTTATCACATGGGCCTGACCAACTTCACTACAGGCAAAGGCAAAGTTAATCTGGCCGACTCCAATGTCCGTCCACTGGAGGTGTTTAT GTGCAGTATTGTCCGCAAGATGGGATATGGTGAAGGCTTTAAGTGGCTCTCTCAGTACATTAAGTAGGGAAATCAAACACACAAGTATCATCCTACCGAT GCTGATGCAATCTACATAGTTTTTAGACGCTTATGCTCTTGTAAATTGGATACTTGAATGGTAGTTTTACATGGTTATGAGTGGTCCTTGTTTGTTTTAT TTTTCCTTTTCCTTTTTAGTAAGAGTTGACAAACTTGTGTTGCAGTGTATATTAGATGCTAAAATTGGAGAGCTAATAAAGTGTGACTTGAGTTTTAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_156973; |
| Additional information | - |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_423168
| Blastp | - |
|---|---|
| Blastx | GTP-binding protein SAR1A from Arabidopsis with 92.45% of identity |
| Eggnog | Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. SAR1 controls the coat assembly in a stepwise manner. Activated SAR1-GTP binds to membranes first and recruits the SEC23 24 complex. These SEC23 24-SAR1 prebudding intermediates are then collected by the SEC13 31 complex as subunits polymerize to form coated transport vesicles. Conversion to SAR1-GDP triggers coat release and recycles COPII subunits (By similarity)(ENOG410YIKI) |
| Kegg | Link to kegg annotations (AT4G02080) |
| CantataDB | Link to cantataDB annotations (CNT0002034) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019464140.1) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |