Ll_transcript_423169

• Id Trinity: TRINITY_DN47960_c8_g1_i2
• Name Transcript: Ll_transcript_423169
• Sequence: CAAATATTTCCTCAGCCAACCTTTTTCACTGGCGACGCAGGTAGTCAGTATTGCTTCATGGATACTCTATAATTCTAAAGAAATCATCGAAAACAACAGA AGAAAAAAAAAAGGTTTTTCTCTGTGCTGCGTTGTCTTTGTCTCTCCGTTGATTCTTCTCTCACTTTCCTCCGCCGTTTCTATTTTCCGGTGACCTCTCG GCACCGCAGATTTTGTTGCTCAATTCTGAAATTTCAGATACAAAAATAATAATAAAAAATGTTTCTTTTTGATTGGTTCTACGGAATTCTGGCATCACTG GGTCTGTGGCAAAAGGAAGCGAAGATTCTGTTCCTAGGGTTAGATAATGCTGGGAAAACCACCTTGCTTCACATGCTTAAAGACGAGGTCTTTTTATCAT ATCTTATTATTCCGTCGCTTTTTTGAGTTTGAATTTCATTTTAATATAACTTTTATGAAGTTTTTGAGATAATGAGATTTTGGGTGTGATAATATTACAG AGATTAGTTCAGCATCAACCAACTCAGTATCCAACTTCAGAGGAGTTGAGTATTGGGCAGCTTAAATTCAAAACATTCGATTTGGGTGGTCACCAAATTG CTCGTAGGGTCTGGAGGGACTATTATGCTCAGGTTTGTTTCTTATTATCTGTTCAGTTGCATGTTTATGAATTAATACAACATACGTTTATTTGAGTTTA TTTTTGATGCATCATTAGCATGCAACAATCCATTTTAAGTTAGTTATTTTGAGGCTATGTGTCTGTAATATTCAACCATGCATGATTGCTTCTGTTAAAT GATCTTATACTGACATTACATCACATTTAAATTCCTTTGGTATTTTCCTAAGAGAAGAAAGTATCTCATGGTATAAGGAGATAATGAGATAAGTTATATT CTTCTGTCAGTGGAAATATGTATGAAACTAAACAAAGTAGTAAAGGTGTCATACTTTTACTGGCTGGAGGAGATAAATTATCTCCTAGTATGAGGAGATA TATTATCCTCTTCTTCTAAACCATTACACATTTGGATGCAATTAAGGTGAGCCTCAGCTCAAGGATAAGGTTGTTTGCCTTTGACTCGGAGGCCATAGGT TCAAATACTGGAAACTACCTCTTCGCTTGTAAGGGTAAGGCTGCTTACGTATACCATCCCTAGATCTAACTAGATGGGAGCATTCTGCACCAGGTTGCCC TTTGTATAGGTTAGATGCAATTGCAAGCTCACACACTACAATAGTTTCTAAATTGATAATTCAAAACATGCTTGAGCTTTTCCTTTTGGTAAATTTCATG TCATTTGGATATGAGTTTGCAAATGCCTAATGGTGTACAATTTGAATCATCTTGCCCTTTTGCTGCTACGTCCATTTTGTTACCAATTGTTGGCATTAGC AGTTTTAAACCTCTACGTGGTTTTTGCCCAAATAGGGGGGAAAAACCAGTCCAGCCCTACCTAATGCCTGTGAATTATGGTCATGTTCACCCAAATGGGC ACTGAGCAGTCCTTTACACTTTGAAGGAAAATGGGAAATTTCGCTTCTCGATTAAGATGCAGATCATGCATAGAGAAGATTTCTTACTCTTGCTGTTGAT CTGTAATGTTGATAACCTAATTTTGTGGTTATAGTTTAGTTTCCTATGATGGACTTGCATGTTTACTGTTACTGTGTATTTTTATATGATGTAGGTGGAT GCTGTAGTCTACCTGGTTGATGCATTTGACAAGGAAAGATTTCCAGAATCGAAGAGGGAACTTGATGCTCTTCTTTCTGATGAATCACTCGCAAACGTAC CCTTCCTTATATTGGGAAACAAGATAGACATACCTTATGCTGCCTCCGAGGATGAGCTACGTTATCACATGGGCCTGACCAACTTCACTACAGGCAAAGG CAAAGTTAATCTGGCCGACTCCAATGTCCGTCCACTGGAGGTGTTTATGTGCAGTATTGTCCGCAAGATGGGATATGGTGAAGGCTTTAAGTGGCTCTCT CAGTACATTAAGTAGGGAAATCAAACACACAAGTATCATCCTACCGATGCTGATGCAATCTACATAGTTTTTAGACGCTTATGCTCTTGTAAATTGGATA CTTGAATGGTAGTTTTACATGGTTATGAGTGGTCCTTGTTTGTTTTATTTTTCCTTTTCCTTTTTAGTAAGAGTTGACAAACTTGTGTTGCAGTGTATAT TAGATGCTAAAATTGGAGAGCTAATAAAGTGTGACTTGAGTTTTAAAA
• Tissue: pods
• Gene name: LI_gene_156973;
• Additional information: -

Expression of Ll_transcript_423169

FPKM

• PAB: 0
• PNAB: 0.3
• PS1: 0.1
• PS2: 0.3
• PS3: 0
• PW1: 0.8
• PW2: 0.4
• PW3: 0.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_423169

• Blastp: -
• Blastx: GTP-binding protein SAR1A from Arabidopsis with 92.45% of identity
• Eggnog: Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. SAR1 controls the coat assembly in a stepwise manner. Activated SAR1-GTP binds to membranes first and recruits the SEC23 24 complex. These SEC23 24-SAR1 prebudding intermediates are then collected by the SEC13 31 complex as subunits polymerize to form coated transport vesicles. Conversion to SAR1-GDP triggers coat release and recycles COPII subunits (By similarity)(ENOG410YIKI)
• Kegg: Link to kegg annotations (AT4G02080)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019464140.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;