Ll_transcript_423831

• Id Trinity: TRINITY_DN47962_c1_g1_i12
• Name Transcript: Ll_transcript_423831
• Sequence: GTATTTGAGAAAACTAATTAACTAGTTTGTGATAAAAAAGAGTAAAATGTAAAAAATTGAATTTATTAACCCATCCTTCCAGAAACATCTATCAGTTCCC GTAAAAGAGACAGTGGGTTTTCTCAATCTTACGTTCTCTTTTCCTACTTCACTTCGTTTCTGGTTTCTTTGCGAGTTGAGTTTTAGACTGAAAGAGAATG TGCTATTTTCATGACTCTCAAGTCTTCTCCTTCCGTTCCTCTCCCTTCAAAACTCAACCCACAAATAGACCCTTAAATTTTCGCACCCATAAGTGGTTTT TACGATCTTTATTTCATACTCAACAATCAAATATGTATATATATTATGATGTTGTATATTTGCAGCTCTGTATGTATATATGTACAATGAAAGTTCTTTA ATTTTCTTCTCATAAATTAAATTATCGTTTTTTAATTATCATATTAGGTACATCACTTTGTCAAATTATTTTTATTTTAGTAATTAGTAGAAATATTAGT TTAGTTTGGTTTGGTACTGTGTTTAGTGAAGGGGGAAATTACATGCCTTTGTATTGTGTTTCAGAAAAAAAAAATGAGTAGCCTTTCAAATCGAATAATT TATGTTGGCAATCTTCCTGGTGATATTCGCTTGAGGGAAGTAGAAGATCTTTTCCACAAGTTTGGTCCCATCGTTGATATTGATTTGAAGATTCCGCCAA GACCACCAGGTTATGCTTTTGTGGAGTTTGAGGATGCTCGTGATGCTGAAGATGCAATTTATTATCGAGATGGTTACAAATTTGATGGTCAACGGTTGAG AGTTGAACTTGCACATGGTGGACGAGGACGTTCATCATCAGTAGAACGTTACAGTAGTTATAGTGGTAGCAGTGGTAGCCGAGGAATTTCTAGGCGTTCT GATTATCGTGTTCTGATCACTGGATTACCGCCTTCAGCTTCTTGGCAAGATCTGAAAGATCACATGCGTAAAGCTGGTGACGTATGTTTCTCTCAAGTCT TCCATGAACGTGGTGGCATGACTGGGATAGTGGACTATACGAACTATGATGATATGAGATATGCTATTAGGAAACTTGACGACTCAGAATTCCGAAATGC CTTTTCTCGCTCATACATTCGGGTGAGGGAATATGATCGACGGAGTTATTCTAGGAGTCCTAGTCGTGATTCTAGGGGGAGCTATTCTAGAAGCCCTAGC CGCAGTCCGTATATGTCACGAAGTCGAAGCCGCAGTCCGTATATGTCTCGAAGTCGAAGCCGCAGTCATAGTCATAGCTATAGTGACAGGAGCAGAAGTT TGTCTCCAAAAGCAAAACGCTCCCAGCGGTCTGTATCTCTTTCAAGGTCAGTTTATACCTACCTTTGATGGTGGAATGTATCTTTAGATTTCTTCTGAGT AAAAAATAATTTTGTTAAAGGTAATGTAGAGCAGGAAATATGACTAGGGTGAAGATAAAATATCCCCCAAAATGAATAAATCTAGATACGATTAATACAA ATGAAGAGTCATTTGTTTTTCCTGAATGTCAGTAAGAGCTATCCCTTGAAACAAGTGGATGCTGAGCGATGAATATGCGAGGGTTTTACAAAAATAATTC TACACTTGAACTTACTTGCTGCCGAACTTCTTTGTTTTTCTCGTCTATTTTTTGTGTTAAAGTTGATGACGGTGATTCCCTTGGGGTTGATCTAAATAAT TAGAGAGGATTATACATTGTTTATGTCACCACTACCAATTATAAATTTTGGTCTGTTAATTCTGTCATATTATTTATTTCTTATGGATGACTATTTTTTT GCCCAAAAATTATATTCTCATTTGTCGGTTGAGTTTTGGTTAACAGTCATTTGAGATCTGGGTTCATTTGTATAACTATATTTGTGGTATTTTGAGCCAT GCTTTAGTACATAATCGACTTTCTGCAAATTCTCTGCCCGGCAAGGAATGTCTGTTCACTGTTTTTTCATGTCTGTTGGTGGTATTCAAACTTGTCTCTA TCTTTTCAGTATATTATTTCAACTATATTGGATAGACAGAATTTCACTTGACCTTTGAGATTAAGGGTCCCCTTTTCCTATTATCTAATAGTTTTCGTCT TTTCAATTCCTTTTCCACTTGAATAAAAAGATTTCCTTCTCAAGTAATAGTTAGTTAATTACACAGGAAGTCGAGAAAAAGATTTTATTTCATATGATCT GCAAGTTCACATTTTGTAGCACTAGTTTCTTACCCCAGGATAGCATGGTATGGTGGTTTCCTACATGCTTCGGGTGTTTGAAATTTTACAGAACATTCTT GCATGCATGATAGCCGTCACTTAGAATCTTCCCTCTCTTTGGAGCTTCATTTTGTCTCTGCATTTTTTGAAACTTCTTTCTACTTTTCATGCTTTTACAT AGATGGCCTTGATGCTATTGCTTGTTTCCTTCCACATTTATCCTGATTCTTGGGATATCTGCCAGTCAAAATTTCAGCCAACTCCTAAACAGTAATGCTA ACTCTTAGAAGCATCTTCTGGTGTTATAAGGATATAATATCATCTCCTATTCCCCTTATTCTGCATTTAAAACAGCCCCCAAATTTTGGTTTCCTATAAA TTTCTCTGATCCATATGGTTTCACATTCATTTTTCTTTGTTGTTGGGTTGTACTTCTATTTTTGTCTTTTCTAGAGTATTAATATTGTCTCACATTGAAT GTCCTCTCGTTTTTTTACTATTTGTGCAAGTTGGTGGGGCATCTCTTTCCTTACGATTTTCAATTAATTATCTGAAAGCAAACATTTTATTATTCCATCC ACAGTATTCTTCGCATAAAAGTTGACGATCATGGATCTGTCAGCAAAATTCTTGGAATGTGGAAAGATGGAGGGGGCATTGAAAAAGCAGACAATTGGGT TGGCCACTAACTATGTTCATTAGGGTTGAACTGTTTGTTTTCTAGACTTGGCTTTTTGTGGTAACCAGGGGACTGTATGTTATGGTCTTGATGGCATACG GTGCTCAAATGCCTGCAACTTTGTGGTTCAAGACTGGGCGTTGGGGATTGATGAGTTGCAATCTAAAAGATGGATCACCGTGAGCTAAAGTGTGCTAACA GTGCCACCAATTGCATATCACCAATGTTGCAATCCAAAAACTACTTCAACATAACATGTGATCTAAGTATTGGTCTTATCTTATTGCCATATTGGCTTGT GGGTTACATCTTTCCCTTGATTGGTCCAAAGATATCATTGATTGGCAGCAATAAAATGTTTAGCAATTGTTGAGACTATAAACGTGTGATACCGAGCAAG AGTTGTGGTAGATTAATTTTGTCCTTTTGGTTTTGGTAGCTTTGATGTGGAAAATTGGGCTTGACACAACTTCATTGATTATTCCGAATACTGTATTGAG CTTGTTCATCATTTACTTTTTGCAGATCCTTATCAAGATCCAGATCTCCAAGTTCATCTCCTCCCCCTCGCAAGAATCGCAGTCCCAGCCGAAGTCCAAG AAGAAATACCCCACAATCTCGCTCACCTTCGGTGAGATCTGAACGCAGGGGATCTGTTAACTCTGGAGAGAGCAATTGAGGAAACATCTAGAGGAAGCAA TCCAATATTCCTATATAGCCCCATCTAGATTTGTGTTTACAATTTTGGTGGGGTTCCTGAAACGCTTTGAAAGCAGATATGATCTGAAGCATAACTAAAT TTATGTGTACTATCATTAACTTTATTGTTTAGTGTTTAGTGAACTATCAACTCTCTAGATGATATATACTTGTCTTACATAATTGGGCTGTTACATTTTC ACCTTGAATCTGGTAGTTTCACCAACCTTTTGAGTTCTTCTGA
• Tissue: pods
• Gene name: LI_gene_156988;
• Additional information: details;

Expression of Ll_transcript_423831

FPKM

• PAB: 0.5
• PNAB: 0.2
• PS1: 0
• PS2: 0
• PS3: 0
• PW1: 0.3
• PW2: 0.6
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_423831

• Blastp: Serine/arginine-rich splicing factor SR30 from Arabidopsis with 78.57% of identity
• Blastx: Serine/arginine-rich splicing factor SR30 from Arabidopsis with 76.6% of identity
• Eggnog: Rna-binding protein(COG0724)
• Kegg: Link to kegg annotations (AT1G09140)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019422957.1)
• Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;