Ll_transcript_422101

• Id Trinity: TRINITY_DN47972_c1_g1_i1
• Name Transcript: Ll_transcript_422101
• Sequence: GGCTTCATGTGCAAAGGCCCAACCCAAAATCACCCTACTTATACAAAAACGACGTCGTCACAATTTTCCTTTCTGTAAACCCTAAAAGGCTAAAACCCTA GTTAGCCGTTTCTGATTTTCTTCTCCTTAATACTGAGAATTCAACACAAACCCCAAATTACTCTCACTTATACTCTGCACTTTCCTTCAATGGCTCCATT GACGAGGAAGAATCCTTCGAAGCCACAAAAACCTGCAGCGAAGAAGAACCCTAAAAATAGTAAAGTCAAAACTCCCAAAGATGATTCTACTTCCGAGTCC GAACAAGAAGAGATTTTGCAACAACAACAACTCGAAAACGACGTCGTGGATGATGATTCTGGTTCTGATTCGGATTTCTCTTCCGATGGGGACGATCCCT TAGTCGACGATTTCCTTCAAGGAAGTGATGATGAAGAAGAGAAAGCTTCGGGTTTGGATTCTGGGTCGGTTTCAGATGGGGATTCTGATTCAGATGATGA GGATATCGAAACGAAGTCGAGAGCTATCGACGAAGAAAGGGAGAGAGAAAAGGAGGATGCAGATGCTGAAATGCAGCTCAACATCAAAGAAGAGTCTGAT GAGTTTAGATTACCAACCTCTGAGGAACTTGAAGAAGAAGCTCTACGTCCACCTGATATCTCTAATCTTAAGAGGAGGATTGAAGAGATTGTTCGCATTC TTTCGAATTTTAAGACGTTGAGGCAAGAAGGGTCAGCTAGGAAGGATTACATTGAACAACTGAAGAAAGATATATCTTCGTATTATGGTTACAATGAGTT TCTAATTGGTGCTTTGGTGGAGATGTTTCCAGTTGTTGAACTGATACAACTGATTGAAGCTTTTGAAAAGCCTCGCCCTATGTGTCTGAGAACTAACACG TTGAAGACTCGTAGACGGGATTTGGCCGATGTTTTGATAAACAGAGGAGTAAATCTAGACCCTTTAAGCAAATGGTCAAAGGTTGGACTTGTTGTGTATG ATTCTCAAGTACCAATTGGTGCCACTCCCGAGTATATGGCTGGTTTCTACATGCTTCAAAGTGCAAGTTCATTTCTGCCTGTGATGGCCTTGGCTCCCCA AGAGAAGGAACGAGTTGTTGATATGGCGGCTGCACCTGGTGGTAAAACAACATATATTGCTGCCCTCATGAAGAATACTGGGATAATTTTTGCAAATGAA ATCAAGGCAACAAGGCTTAAGTCACTGACTGCAAATTTGCATCGCTTGGGTGTATCAAACACCGTGGTCTGTAACTACGACGGAAAAGAGCTTCCGAAGG TTTTAGGTCAAAATGCTGTTGATAGAGTATTGTTGGATGCCCCTTGCAGTGGAACTGGGGTTATATCAAAAGACGAGTCTGTTAAAACCTCGAAAGATTT GGAAGATATACAGAAATGTGCACAACTCCAGAAGGAACTTATTCTTGCTGCAATTGACATGGTTGATGCCAATTCAAAATCTGGCGGGTACATTGTTTAT TCCACATGCTCAATCATGGTCGCTGAGAATGAAGCAGTTATTGACTATGCACTCAAAAAGAGGGATGTAAAATTGGTTCCATGTGGACTTGATTTTGGGC GTCCAGGGTTTACAAAGTTTAGGGAACTACGCTTTCACCCTTCTTTAGAAAAGACAAGGCGTTTCTATCCCCACGTACACAATATGGATGGCTTTTTTGT TGCAAAGTTGAAAAAAATGAGCAGCTCAAAGCCAAATTCAAAATTATCAGAACCATCCGAGAATGAGGAAGAAGAGACTGAGCTTGTGGAGGAAGAAGAG ACTGGGCTTGTGGAGGAAGAGGAGAAGCCAAGTAACGACCTAAAAGAAAATGACATCGAAACTTCCGAATCTAAATCCAAAAAGGAGAAGCGAAAGATCC CTCCATCTAAACTAAGCAAAGTCATCAAAGAAAATGGCAAAGAATCTTCTGATTCTAAATCCAAAGTTGAGAAGAAAAGGAAATTTCCATCCAAACCAAG TAGTGACATCAAAGAAAATGGCAAAGAATCTTCTAAACGGGAGCCCCAAAAAAAGAAAAAGAAGTCGCAACATAAGGAGGAAATTTCCAAAGCAAGGGAA GAGAAGAGAAATGCTTTAAGAAAAAATAAGACCAGAGGAGATAAGCAACAGAACTGAAACTGAGCAAAGCAGAGATGGTTATACATTATATCTTTGTATG AATATCCAACTGTGCAGTTTAAGGGCATAAGGACTCACTCTAACAACATGGGAGTGCTGTGGTGATTGCTTGCATGGAAGTGTATCCCTTATAATTAGTG GCATGCCCTACTCACAGGGTTCATTTTTGTTTTTTGTTTCTTTTCCAAAGTGATTTAGCTTAAGGCATGTTTTAACTTTAACTCACCAGAAAACTATATA CATTAGAAAGAACACAAGTTATTTGTTTATTTTCTTTTTGGGTATCAATTATTTGAGTTGTTTTAATTACTGTCTTCATCAATAGCATGCGTTATCTTAT GTAATGATTAAGATTCATATTGGTTTTAAATGGTTGTAACTTGATTTAAATGGAGTCTTT
• Tissue: pods
• Gene name: LI_gene_157101;
• Additional information: details;

Expression of Ll_transcript_422101

FPKM

• PAB: 0.6
• PNAB: 19
• PS1: 11.1
• PS2: 15
• PS3: 13.6
• PW1: 10.9
• PW2: 9.1
• PW3: 7.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_422101

• Blastp: Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase from Homo with 64.99% of identity
• Blastx: Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase from Homo with 65.22% of identity
• Eggnog: nOP2 Sun(COG0144)
• Kegg: Link to kegg annotations (4839)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019447055.1)
• Pfam: N-terminal domain of 16S rRNA methyltransferase RsmF (PF17125.4)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;