Ll_transcript_422103

• Id Trinity: TRINITY_DN47972_c1_g1_i3
• Name Transcript: Ll_transcript_422103
• Sequence: TTCATTTCATTGCTAGCCATACCAAATCCCAACCGAGAAAGTCAATTTAACATTTTTCTACATTCTATGCAAAAACGACGTCGTCAACGTGTTCGTTTCC CCGTAAACCCTAAAACCCTAGAGCTAGCCGTTTCTGATTTCTTCTTCTCGTTACTTAGAAGAACAAACCCAAATCACAATTCGCATACACTGTTGTTACT TTCCTTCAATGGCTCCTACATTGAAGAAGAAACTTTCCAAGGCACAAAAATCCACAACGAAGAAGAATCTCAAAAACAGTAAAATCATAACTCCCAAACA TGATTCTACCTCTGAATCTGAACAAGAAGACGTGCTTCAAAAAAACGAACACGAAGTCGTAGATGATGATTCGGAGTTTTCTTCTGATGGGGATGATCCT TTAGTCGACGATTTCCTCCAAGGAAGCGATGATGAAGAAGAGAAAGCTTCGGGTTTGGATTCGGGTTCGGGCTCAGATTCTGATTCGGATGAAGAGGATA TTGAAACGAAGTCGAGAGCTATTGATGAAGAAAGGGAGAGAGAAAAAGAAGACGCAGATGCTGAAATGCAGCTCAATATCAAAGAAGAATCTGATGAATT TAGATTACCAACTGCGGAGGAACTTGAGGAAGAAGCTCTACGGCCACCTGATATTACTAATCTCAAGAAGAGAATTGAAGAGATTGTTCGTGTTCTTTCG AATTTTAAGACCTTGAGACAAGACGGGTCATCAAGGAAGGATTACATTGAACAGCTTAAGAAAGATATACGTTCCTACTATGGCTACAATGAGTTTCTAA TTGGTGCTTTAGAGGAGATGTTTCCAGTTGTTGAACTGTTACAGCTGATTGAAGCATTTGAAAAGCCTCGGCCAATGTGTCTGAGGACTAACACTTTAAA GACTCGCAGAAGGGATTTGGCAGATGTCTTGATAAATAGAGGAGTAAATCTAGATCCTTTAAGCAAATGGTCAAAAGTTGGACTTGTTGTGTATGATTCT CAAGTACCAATTGGTGCCACTCCCGAGTATATGGCTGGTTTCTACATGCTTCAAGGTGCGAGTTCTTTTCTACCTGTGATGGCATTGGCTCCACAAGAGA AGGAACGAGTTGTTGATATGGCGGCTGCACCTGGTGGCAAAACAACGTATATTGCTGCCCTTATGAAGAATACTGGTATAATTTATGCAAATGAAATTAA GGTGTCACGACTGAAGTCACTAACTGCAAATTTGCATCGTATGGGTGTAACAAATACTGTCGTCTGTAATTATGACGCAAAGGAGCTTCCAAAGGTTTTG GGTCAGAACACTGTTGATAGAATATTATTGGATGCCCCTTGCAGTGGAACTGGGGTTATATCAAAAGACGAGTCTGTTAAAACCTCTAAAGATTTGGAAG ATATACAGAAATGTGCCCGTCTACAGAAGGAACTGATTCTTGCTGCAATTGACATGGTGGATGCCAATTCAAAATCTGGAGGGTACATTGTGTATTCCAC CTGTTCAATCATGGTTGCTGAGAATGAAGCAGTTATTGACTATGCACTTAAAAAGAGGGATGTGAAGCTGGTTCCTTGTGGACTTGACTTTGGGCGCCCA GGGTTTACAAAGTTTAGGGAACAACGTTTTCACCCTACCTTAGAGAAGACAAGACGTTTCTATCCTCATGTGCACAATATGGATGGTTTTTTTGTTGCAA AGTTGAAAAAAATGAGCAGCAGCTCAAAGCCAAGTGCAACTTCCGAACCATTAGAAAAGGAGGAAGAAGGTATTGAGCTTGTGAAGGAAGAAAAGGCAAG TAATGGCCGAAAAGAAAACGGCAAAGACTCTCCTGAATCAAAATCCAAAAAGGAGAAGAAAAAGAACTTTGCACCTAAACAAAGTAATGACATCAAAGAA AATGGCGAAGAATCTTCTGAATCAAAATCCAAGAAGGATAAGAAAAGGAAATTTCCACCCAAACCAAGTAATGACATCAAAGAAAATGGCAAAGAATCTT CTGAATCTGAGTCCAATAAGAGAAAGAAGAGGCAACTTCCATCCAAGGAGGAAATTTCAAAAGCCAGGGAAGAGAAGAGAAATGCATTAAGAAAAAATAA GAGCAAAGGTGGTAAGCAACAGAACAGTAAATGAGGTGGCAATACATGAGGCAGAGATGGGTTTATGATATCTCTGAGGTGATTGCTTGCATGGAAGTGC ATCTTATCTTTGTAATCAGTGGCATATCTCAGGGATAATTTTTGTTGTTTGAGTAGTGATTTAGCTGAGGCATGTTTATACATTAGAAAGAACAAAAGAT ATTTGTTCTCCTTTTGGCTCTCTTCTATTTATCAGTAGTTATCTTCTGTAAGAACTACACTTTCTTCAAATTATGATTTTAAAGGTTGCATCTTCACTGT TATGTTCTCATGATCAGGTTTCAATGTGAATGGAACTGTATTTTAGTATTCTC
• Tissue: pods
• Gene name: LI_gene_157101;
• Additional information: details;

Expression of Ll_transcript_422103

FPKM

• PAB: 0.1
• PNAB: 10
• PS1: 10.1
• PS2: 6.3
• PS3: 8.1
• PW1: 6.4
• PW2: 5.6
• PW3: 3.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_422103

• Blastp: Probable 28S rRNA (cytosine-C(5))-methyltransferase from Mus with 53.47% of identity
• Blastx: Probable 28S rRNA (cytosine-C(5))-methyltransferase from Mus with 64.55% of identity
• Eggnog: nOP2 Sun(COG0144)
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019426277.1)
• Pfam: N-terminal domain of 16S rRNA methyltransferase RsmF (PF17125.4)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;