Id Trinity | TRINITY_DN47978_c1_g1_i1 |
---|---|
Name Transcript | Ll_transcript_423509 |
Sequence | GTTTGAGTAAACAACAAAAAATAGAGTTATAAGTTGATCTGATAATTAGGGTAGAGGAGATTGATGATTCGAATCTCATCAACAACAAAAATACTAACAC ACTAACAATGACAAAAAAAAAGTATTCCCTAACTAACTAGTGTATTCCAAAAAATGTCATGTTGTGGTGAGAATAGCAAGTTTATTCTTTAAAGTATAGA ATAGACCTAATTGATTTGAATAATGATACCATGGCGTATGTGTAGACGTTTAACATTTTATATATTGGAATGCTTTTGTCTTTAGTAATAATTGTCTCCC CTTTAGAAAAACAATGATAACAATTTGTCTCCATTCTTAATTTTCTAAAGCTGACTGCACAATTTATGTTTAATTTTTACCGTAGACTTGGACTATTGAC TTCTTTATGCACCCAATTTAAGTGTCCTAACTATGAATTTTATGAAGGAGTTTGTAAAATGCTATTTTTTTCATGGGATTATGTCGCGTAGTTACCTAGT AGGTGGTATAGGCATGATAGCACGGATATATAATTCATCTGTTATGTGGTATGGTGAATTCGGTTTGTAATACATATGATGAATGAGAGATTCGACGTGC AATATATGAATGCCGTATGATAATTGAGTATATAGTTTGTAGAGATCTTTGCGATATTCAGATACAAAGCTTTACCTTCAATGGCTTCCAAAAGAGGTTC TTCTCATATACCAGCATGGAAGTATCATGTTTTTTTGAGTTTCAGGGGAGGAGACACTCGCAAAAGCTTTACAGATCACTTATATGCTGCTCTTAACAGA AAAGGCATTATAGTTTTCAGGGATGACGAACAACTCCTTAGAGGAGAAGTTATTTCGCAACAACTTCTTCATGCAATTCAACAATCTCTCACCTCAGTTG TTGTTATCTCCCCAGATTATGCTTCTTCTACATGGTGCTTGGAGGAACTTCACAACATCCTTGAATCCACAACAGTGTTGGGTCGCAAAGCTTTTCCAGT TTTCTATGGTGTAGATCCATCTCATGTTAGACATCAAAGTGGAAGTGTTGCAGAATCATTCAGGAAACATGAACAAAGGTTTTCTGGTGACATGGATAAG GTGCAAAGATGGAGAGATGCTTTGAGAGGAGTTGCCAATTTATCTGGAAGGGATTCCAAAGACAGGCAAGAAACAGAGCTCATTGAAGATATTGTTGAAG ACGTGTGGATAAATTTGCAACAGAAGTTGCCATCAGAGAATGATGGACTAGCTGGACATCTTTCAAGGATAAGAGAACTAGATTCACTTTTGAGTATAGA ATCATTGGATGTTCGCTTCATAGGAATATGGGGTATGGGTGGAATAGGAAAGACAACTCTTGCTAGAGTTGTTTTTGACAAAATCCGCGACAACTTTGAA ATTCCCTGCTTTCTTCATAATGTTAAAGAGGTTTCTAAAACACCAGATGGGTTGGTTTGCTTACAAAGAAAACTTCTTTCTCCCCTAAAAATAAGAAACC TTGAAATTGATGATTTGTATGATGGAAAGAAGAAAATCAGAAACCTTTTATGCAACAAAAAGGTTCTTCTAGTCCTTGACAACATTAGTTCTTTAAGCCA ACTAGAGAATTTGGCTAAAAATCAAGAGTGGTTTGGTGTAGGCAGCAGAGTAATAGTGACAACAAGGGATATGCACTTGCTGGTATCACATGGAGAATGT GAGAACTATGAGATGGAAATCTTAAAGGAAAGTGATTCTTTTCAACTCTTTAGTCAAAAAGCTTTCAAAAGTGATAAACCTCCAGAATGTTATTTAGAGC TAACTAAAAGTATTCTCCAATATGCTGGAGGTCTTCCTTTGGCACTTGAAGTATTGGGTTCTTTTCTTTGTGGGAGAAAACTCTCTGAGTGGGAGGGTGC TTTGGCAAAGATAAAACAAGTTCCGCCGGATGAGATTTGGAAGACACTAAGAGTAAGTTATGATGAACTGGAAGATGCAGAAAAGGATATGTTTCTAGAC ATTGCATTCTTCTTTGTGGGACAGTTGGAATTAGAACAAAAATTGAAAGACTGTGGTCATCGTCCAACAATAGGATTAAGTCTTCTTAGTGAGAAATCAT TGGTAACTTGCCGAAATGGAACATCGGAAATGCATGATTTGCTTCAGGAAATGGGTAAAAAGGTCGTTTTTCAAGAATCTCCCAATGATGCAAGCAGACG CAGTAGGCTGTGCTCTTTAGAAGAAGTTAATCAAGTATTGAGAAAAGCTAAGGGGACAGAATGCATTAAAGGAATAATTGTGAAGTCAAGTGACCCATGT GAAGAACATTGGGACCCTGAAGCTTTCTCAAAGATGTATAATCTTAAAGTACTGGTCATTTTGTGCGATTTGTACCTCCCCCTTGGCCTCAAATGTCTCT CTAGTTCGTTAAAAATCCTTGAATGGGAAAGTTGTTCTTTGCGGGAGCTACCACTTGGCTTGCCACTTGATGAACTTGTTCACTTGAAAATGCATTGCAG CAAGTTTAATCAACTGTGGAATGGAACTACACATTTTAGAAAGCTAAAATCAATTGATCTCACTGATTCTAGAGATCTGATTCGAACTCCAGATATTTCT GGGGTTCCATGTCTTGAAAGGTTAGTTTTGAAAGGTTGTAAAAACCTTGTGGAGGTTCACCAATCTGTTGCACAGCACAAGCATCTTCTTGTACTGAACT TGGAATGCTGCATCAATCTTAAAACCCTTCCAAGAAAACTGGAGATGGATGCATTGAAGGAGCTCATTCTTTCTGGTTGCTCACGAGTTAAAAAGCTTCC CGAGTTTGAGAAGAGCATGGCATATCTCTCTATTATTAATTTAAAAGATTGCGAAAGTCTTATTTGTCTTCCACAGAGTATCCTCAACTTGAAATCCCTT AGAGACCTCACTACCCATGGTTGCTCAAAATTGTTTGGGCTGCCAAACAATTTAAATGAGAACAATGGTGTGGAAGAAGTTGAAGTGACTGAAGCAACAA GGAGAGAAGCATCTTCATCTCTTAGTGATTTTAAAGCTTTGGTAACATTATTATCCAAAGGATGTGAATGGTTAATTAGCAAATCTTGGAGCATATCTCT CCCTGCTGATGAAGTATTTGGTTGTAAGCAGTATCCAATTAGCATGGACCTGAAGTTTTCTCCTCTGTTAGGTTGCCCCATGTTGAAGAAATTAAATTTG TCATATTGTAATCTCAGTGATGGATCAATTCCTAATGATTTTGGACAATTATCTGCACTTGAAGATTTAATTCTAAATGGGAACAATTTTGTTCACCTTC CGGCATGCATTCAGAAATTCCATCGGCTAAAACGTCTTGAATTAAGTGATTGCCCAAGGCTTCGGACGTTGCCTTTGCTTCCACCTGCTGTAACTTATTT ATTTTTGGAAAATTGTACTCAACTAGCACCAATATCATTTGACTCAGGAAGGATATGGAATATCCTTGAGGGAAGAAGACGGGAGTTGAAATATGAGTTT TGGTTCATGGTGCCAGGGAGTGAAATTCCACTATGGTTTGAGAATCAGGATTATTTTCTTCCAGACCCAAATTTACAGAGTCCTGATTATGACTATGACG AAGAGTATGGTTTTTGTGTGTCAAAGATGATAGACATCCATGACCATTATCCTTGTTGGTGGGTGGGAATTGCCGTATGCCTTTCACTACAAAACGCTGT GATCCACGAGCATGATTGCGATGCACCAATTCATATTCAGCAGAGCCTTAAATATCCTTTGACAATTGACCCTTTAGACTTCAAGGTTGGCTATTTAACA AATTTCAAGGGCTGCCACTTGCTTATTATAAACATAGGGAGGGGTAGTATTCCCATGCCCTATGTTTGGGGTTACAAGAAAGTGCAATTGATAATTACAG GTGAGAGTATGTGCGGGTGCGGGAAGCTGAAACTGAGGGGCTTCGGGAGCCGTGTGATATATGAGGATGATCAATGGTGGCAAAGAGATGAAGAAACAAA TGAAGTTGAGGTAAATGCATCTTCCTTTCCAGTTCAGTATGGTATTAATCTGAAGCAATCAAGAATGACTGAAATTATAGATAACTTACAATGTGATGAG CCAACAAGGAAGCATGTCAGAATCCTTTATTTCTTATTATGTTTCTTTTCTAGTTTTAACAAGCTATCCACATAACCCTTAAGCCTTAAATATTTTCAAT GGCGTCCTCTTTGAATCCCAATAGTGCGTATTCCACGTGCACTGAACTACCTGCTGGTTTTAGTCCATTATATTGTGTTTTATGTTTTGGAAGAAAAAAC ATACATATATCAAGTTTACAGTAATGATTCTTTTTTCTTCCGGATTTGTGTTAATTCTTGTTTGATTACACTGGAGGAAATAAGGTTTTTATGTGATTAT GATAAAAAGGAACCAAATATGGTAGATGAGATTATTTTAGATTTCTCCTTTATATTTTGTTTTTACAACAGTGAAATACACTTACTAGTTATAATAAAAT GATATTGTTTTATGTCAAAA BLAST |
Tissue | pods |
Gene name | LI_gene_157150; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_423509
Blastp | TMV resistance protein N from Nicotiana with 36.98% of identity |
---|---|
Blastx | TMV resistance protein N from Nicotiana with 36.88% of identity |
Eggnog | - |
Kegg | - |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019465220.1) |
Pfam | TIR domain (PF01582.19) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |