| Id Trinity | TRINITY_DN47985_c3_g3_i6 |
|---|---|
| Name Transcript | Ll_transcript_422629 |
| Sequence | CAGGTCAGATAGCAATGGGGAGGTTAACACTGTTCAGACTTTCAAGAATACATTACACAGCAAGAAGGCAATTGTAGTTGCCACAGGTTGTTGGACTGGT TGTCTGATACAGGATTTGTTCAGAAATTGGGGAATGGAGATAGATGTTCCGGTAAAGCCCAGAAAGGTGTGTTTATATACAGCATGAACTGGCTTACCAT GCATGGCTTACAGTTATTTCATCCTTTTCCTTGTACTGTCATTTACCATGCACTATGGTACATTTACTTTTCAGCGATAAGGAAGGTCTAGCAGTGGAAT TTTTCTTATTTGCACTCTGACTTATTAGTGGTGACAGGTGGGGGCGATAAGGCAGAGAAACTTTTTATCACTGTCTCGGAGTTTCTTCTTAAAAAACTTC TAACAAGAAAGGAGATTATTAGAAATCAGTTGGGTGTGTGCTTAGCCACAATTTAGTATTTCGGTGAAAGGACTCAAAATGTCCTATCTTACAATCCATA CAGTCTCTTGCTTGGAAAGTAATGAGTTCAGACATTTGTTTTACATTATTGTCCAATATTTCCTTTCATTTCAAGCTCCTATTCTTTACTTCAGGTGTGA ACTTTGACCCTAATTTTTGGTTGTGCTGCTTCCATGAGTCCTTATAATTTTTAAACTAAATGCGGTGTTTTTGCCTTGTTTTCAATGATAGAAGAAGTTT AAAACCTCACTTTTTGAAACTTTAAAAATGTGTTAAATCTATAAATTAGAAAGATAAAGTCATATACAAAATAAGTCAAGGGAAAAACGAAATCATTATC GAATCTCATGGCTGATTGATTTGTGGTTTGTAATTAATTAGCCTTACTTTTACTGTTTGAACAACATTGACTCCAGTTGCTGCTGCTTTATGAAAAACAT AGGAAATCAAGAGCCTTGTGAATATTCTTTTTTTATATGCGCCTTGTGAATATTCAAAACTTTAGTTTGTATGTTGGCTTGACATCTTTCTACTGTTTTG ATCTTCAAAGAGGTATTTTTTATTTAATTTCCATAACTCATGCCTGTGGTGTTGTTTGCAGCATTAATGTTACATGTATAATGAAAAAAGCACATGTATT TATGCACATACTAACGAGATTGTATGGTCTAATTACTCTAATGCAGGCCTATTTTTTAAGTTTGTAATTCATTTCTGTTTTGTCTGAAGGGTCACCTACT TGAGCTTCAGAATTTAAATTTCCTTCAATTGAATCATGGCCTGATGGAGGCAGGTTATGTTGATCACGCAACATTGTCCGGTTTAGAATCGTCGGATCAT GGACGAGACTTATCTGTTTCAATGACAGCAACTATAGATGCAGGAGGGAATCTTCTTATTGGGAGTAGCCGCGAATTTGTTGGATTCAACACTGATTTGG ATGAGTCTGTTGTCTCTCATATATGGAAGCGGGTTGGAGAATTTTTTCCCAAATTGAAAACGCTTTCCCTTTCAGATCTACGCGCAAGTAGAAAAGTCAG AATAGGATTACGGCCATACATGCCCGATGGGAAGCCAGTGATTGGTCTTGTGCCAGGCTTGAAGAATGTGTACATTGCAGCAGGCCATGAAGGAGGAGGG CTTTCAATGGCTTTGGGAACTGCTGAAATGATGGTTGATATGATATTGGGTTGTCCCAGAAAAGTTGATAGTGCCCCTTATGCTGTACATAGAGTTCTTC ATCACTGACATAAATGCTAGAACAGAAGTATTCTTCATACTTTTAAGGATTTTTTACCATTAATCCAAATTAGATAAGTTTGTGAACTTCATATCAACTT GAACAATTGTTGGTTCAAGTGGTATATGTTTGATT BLAST |
| Tissue | pods |
| Gene name | LI_gene_157245; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_422629
| Blastp | D-amino acid dehydrogenase from Yersinia with 33.67% of identity |
|---|---|
| Blastx | Glycine oxidase from Pseudomonas with 30.09% of identity |
| Eggnog | Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34 (By similarity)(COG0665) |
| Kegg | Link to kegg annotations (YE2281) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019461232.1) |
| Pfam | FAD dependent oxidoreductase (PF01266.23) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |