Ll_transcript_422630

• Id Trinity: TRINITY_DN47985_c3_g3_i7
• Name Transcript: Ll_transcript_422630
• Sequence: ATGAAAATAACATTTACTCGAACATAAGGATAGTATCGCACAAAGAAGAATCGAAGATCTTGTATCATTTCCATTGAATATGATGATATCTTCTTCACCA ACCACATTGTTACACAGCCACAACAACACTCTCTCTTCCACTCTCACTCATAATCATCATCATTCCATTTCATTTTCCTCCAAAACAATTGGAACCCATA AAAACAAAGTGGGTCGCATTTCTGCTTCTGCTTCTCGATCATTTGATGTTGTCATCGTTGGTGCTGGCGTTATTGGGTTAACCATTGCTCAACAACTCTT GAAAGCTTCTGATTTATCAGTTGCAATTGTTGATAAGGCTATTCCTTGTTCTGGTGCAACTGGTGCAGGGCAGGGATATCTGTGGATGTCACATAAGACA CCAGGGAGTGCTACATGGGATCTTACATGGAGAAGTCACCAACTTTGGAAGATGTTGGCAGAAAGCCTACAAGAGCAAGGCTTGAATCCTTTGGTGGAGT TGGGTTGGAAGAAAACAGGAAGCCTATTAGTCGGTAGAAGTCGTGCAGAATCAGACATGCTAAAAGGGAGGGTGAAACAGCTTAATGAGGCTGGGTTGAA AGCAGAGTACTTGTCTAGCAGTGATTTGTTTAAGCAGGAACCTGATCTGTTAGTGGACGAAGACAGTGCAGCTGCATTTTTACCAGATGACTGCCAATTG GATGCCCATCTTACTGTTGCACATATCGAAAAGGCTAACAGGAATTTTGCATCTGAAGGAAGATATGCAGAATTTTATAACGAGCCAGTGAAATGTTTTA TCAGGTCAGATAGCAATGGGGAGGTTAACACTGTTCAGACTTTCAAGAATACATTACACAGCAAGAAGGCAATTGTAGTTGCCACAGGTTGTTGGACTGG TTGTCTGATACAGGATTTGTTCAGAAATTGGGGAATGGAGATAGATGTTCCGGTAAAGCCCAGAAAGGGTCACCTACTTGAGCTTCAGAATTTAAATTTC CTTCAATTGAATCATGGCCTGATGGAGGCAGGTTATGTTGATCACGCAACATTGTCCGGTTTAGAATCGTCGGATCATGGACGAGACTTATCTGTTTCAA TGACAGCAACTATAGATGCAGGAGGGAATCTTCTTATTGGGAGTAGCCGCGAATTTGTTGGATTCAACACTGATTTGGATGAGTCTGTTGTCTCTCATAT ATGGAAGCGGGTTGGAGAATTTTTTCCCAAATTGAAAACGCTTTCCCTTTCAGATCTACGCGCAAGTAGAAAAGTCAGAATAGGATTACGGCCATACATG CCCGATGGGAAGCCAGTGATTGGTCTTGTGCCAGGCTTGAAGAATGTGTACATTGCAGCAGGCCATGAAGGAGGAGGGCTTTCAATGGCTTTGGGAACTG CTGAAATGATGGTTGATATGATATTGGGTTGTCCCAGAAAAGTTGATAGTGCCCCTTATGCTGTACATAGAGTTCTTCATCACTGACATAAATGCTAGAA CAGAAGTATTCTTCATACTTTTAAGGATTTTTTACCATTAATCCAAATTAGATAAGTTTGTGAACTTCATATCAACTTGAACAATTGTTGGTTCAAGTGG TATATGTTTGATTCCTCTTAAGTAATGTCTCGAGTTCGAGTATTGTGGATGGAAAAA
• Tissue: pods
• Gene name: LI_gene_157245;
• Additional information: details;

Expression of Ll_transcript_422630

FPKM

• PAB: 1.8
• PNAB: 7.8
• PS1: 6.8
• PS2: 3.2
• PS3: 6.8
• PW1: 6.6
• PW2: 3.7
• PW3: 3.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_422630

• Blastp: D-amino acid dehydrogenase from Vibrio with 23.97% of identity
• Blastx: D-amino acid dehydrogenase from Enterobacter with 23.53% of identity
• Eggnog: Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34 (By similarity)(COG0665)
• Kegg: Link to kegg annotations (VS_1133)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019461232.1)
• Pfam: Thi4 family (PF01946.16)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;