Ll_transcript_422632

• Id Trinity: TRINITY_DN47985_c3_g3_i9
• Name Transcript: Ll_transcript_422632
• Sequence: CAGGTCAGATAGCAATGGGGAGGTTAACACTGTTCAGACTTTCAAGAATACATTACACAGCAAGAAGGCAATTGTAGTTGCCACAGGTTGTTGGACTGGT TGTCTGATACAGGATTTGTTCAGAAATTGGGGAATGGAGATAGATGTTCCGGTAAAGCCCAGAAAGGTGTGTTTATATACAGCATGAACTGGCTTACCAT GCATGGCTTACAGTTATTTCATCCTTTTCCTTGTACTGTCATTTACCATGCACTATGGTACATTTACTTTTCAGCGATAAGGAAGGTCTAGCAGTGGAAT TTTTCTTATTTGCACTCTGACTTATTAGTGGTGACAGGTGGGGGCGATAAGGCAGAGAAACTTTTTATCACTGTCTCGGAGTTTCTTCTTAAAAAACTTC TAACAAGAAAGGAGATTATTAGAAATCAGTTGGGTGTGTGCTTAGCCACAATTTAGTATTTCGGTGAAAGGACTCAAAATGTCCTATCTTACAATCCATA CAGTCTCTTGCTTGGAAAGTAATGAGTTCAGACATTTGTTTTACATTATTGTCCAATATTTCCTTTCATTTCAAGCTCCTATTCTTTACTTCAGGTGTGA ACTTTGACCCTAATTTTTGGTTGTGCTGCTTCCATGAGTCCTTATAATTTTTAAACTAAATGCGGTGTTTTTGCCTTGTTTTCAATGATAGAAGAAGTTT AAAACCTCACTTTTTGAAACTTTAAAAATGTGTTAAATCTATAAATTAGAAAGATAAAGTCATATACAAAATAAGTCAAGGGAAAAACGAAATCATTATC GAATCTCATGGCTGATTGATTTGTGGTTTGTAATTAATTAGCCTTACTTTTACTGTTTGAACAACATTGACTCCAGTTGCTGCTGCTTTATGAAAAACAT AGGAAATCAAGAGCCTTGTGAATATTCTTTTTTTATATGCGCCTTGTGAATATTCAAAACTTTAGTTTGTATGTTGGCTTGACATCTTTCTACTGTTTTG ATCTTCAAAGAGGTATTTTTTATTTAATTTCCATAACTCATGCCTGTGGTGTTGTTTGCAGCATTAATGTTACATGTATAATGAAAAAAGCACATGTATT TATGCACATACTAACGAGATTGTATGGTCTAATTACTCTAATGCAGGCCTATTTTTTAAGTTTGTAATTCATTTCTGTTTTGTCTGAAGGGTCACCTACT TGAGCTTCAGAATTTAAATTTCCTTCAATTGAATCATGGCCTGATGGAGGCAGGTTATGTTGATCACGCAACATTGTCCGGTTTAGAATCGTCGGATCAT GGACGAGACTTATCTGTTTCAATGACAGCAACTATAGATGCAGGAGGGAATCTTCTTATTGGTAACCTTCTTTGCTATTGCAGATCTATATGTTGACAAT TGCATATGTTGCTTATAACTATTATTTATATTGAATAATTCTTTCTTCTAAAAATTTTCCAAACAAACAAGTGTGCATGGTGGTAGCTATCTATCCATTC ACTTGTTTATCAAAGTTTCATTTGCATATATAAGATTTATTGTTATATTTCTATTTTTATGAGCGATGGAACTCTGGTATTTTATTGCTTAGAAACAAGG AAAACCTCCGGAATTACAAGTGCGTTGCCGAACTTCGAGGGTCTGCACCTCCCAATGCCCAAAGGCCCCGTTTCTCTCTACAAATGACTAGATGTTCTCA CCTTCTAACCCCTCCCGTATTTCTCTAGCTATCCCAATCCCAACCAACTATCTGAATAACAGATTCCTAACAGCATTCTAAATCGGGGTTACCTATCACG GAGTGGAGTGAGAGTTTGTGATCATTATTAAATTGTTAAGACATGCATTTGGATTGAATTCATGTTTTTGGCTGAACTAAGTTAGCTATAGACTTGTAAA ATAAATTTCATGAATAGACTAGTTTTTGCATTTGATGGATATGCTTCTATTACTCCTTCATGATTGTATCTTTTTTGTGTGCATATCTCGTGGTTAAAAA ACCAAAATCTTCTATACTATGAAGGGAGTAGCCGCGAATTTGTTGGATTCAACACTGATTTGGATGAGTCTGTTGTCTCTCATATATGGAAGCGGGTTGG AGAATTTTTTCCCAAATTGAAAACGCTTTCCCTTTCAGATCTACGCGCAAGTAGAAAAGTCAGAATAGGATTACGGCCATACATGCCCGATGGGAAGCCA GTGATTGGTCTTGTGCCAGGCTTGAAGAATGTGTACATTGCAGCAGGCCATGAAGGAGGAGGGCTTTCAATGGCTTTGGGAACTGCTGAAATGATGGTTG ATATGATATTGGGTTGTCCCAGAAAAGTTGATAGTGCCCCTTATGCTGTACATAGAGTTCTTCATCACTGACATAAATGCTAGAACAGAAGTATTCTTCA TACTTTTAAGGATTTTTTACCATTAATCCAAATTAGATAAGTTTGTGAACTTCATATCAACTTGAACAATTGTTGGTTCAAGTGGTATATGTTTGATTCC TCTTAAGTAATGTCTCGAGTTCGAGTATTGTGGATGGAAAAA
• Tissue: pods
• Gene name: LI_gene_157245;
• Additional information: -

Expression of Ll_transcript_422632

FPKM

• PAB: 0
• PNAB: 0
• PS1: 0.3
• PS2: 0
• PS3: 0.6
• PW1: 0.4
• PW2: 0
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_422632

• Blastp: -
• Blastx: D-amino acid dehydrogenase from Yersinia with 34.02% of identity
• Eggnog: Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34 (By similarity)(COG0665)
• Kegg: Link to kegg annotations (YE2281)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019461232.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;