Ll_transcript_327225

• Id Trinity: TRINITY_DN48001_c0_g3_i11
• Name Transcript: Ll_transcript_327225
• Sequence: CAATTTACTCCGTTCAACATGAGGAAGAAGAACAAAACAAGTGGAACCAAAAACCCTCAATGATGAATAATTAGGAGGATGACCATACAACCTTTCAAAA GGAGACAAACTTGAAGTAACGGAAGAAGGAATTCTGTTATTGATATGAACCGCAGTTTTGAGAGCCTCACCCCAGAACTCAAAAGGAGCTGATGCTGAAA GAAGCATAGAACAGGCTGTTTCAAGAATCTCACGATGCTTTCTTTCAGCAACTCCATTTTGTTCAGGGGTGTCAGTACAAGAGGCTTGGTGAACTGTTCC ATCAGAGGAAAGTAACTCAGAGAATTTGTTAGAGGTGTATTCACCACCTAAATCGCAGCGGAAGCATTTAATAACAGAGTTATATCGAGTATTAACCAAA GCACGAAAATAGCAATAAATACCAAAGAATTCAGAACGATGTTTCATAAGAAAAATTCAACAATAACGGGTGTAATCATCAATGAAAGAGACATAATATT TTGATCCACTTTTAGTAGCAATTGGGGATGGACCCCATACATCAGAATGAACCAAATCAAAAGGTGTCTTAGAAATTGAAACACTCTTAGGAAAAGGTAA AGCAGAAAACTTGGCAAGTTTACAACCACAACAGTCAGAAATGTCATTTGGTTGTAATGATCCTAAGACTCCCGTTGATGCTAAGTATTTCAAACGAGGA GAAGATACATGACCCAGACGAGAATGTCATAAATTAAACTTAGAAGAAGACAAATTCAAACGAAAAGATGATAAATCAACTGTAGGAGCTGCAACATGTG GAAGCTTCAGTTCATCCAAAATATAAAGCCCCCTGTCTATGGCCTGTCCCAATCAGCCTCTTCGATTGAGGATCGTACACATAACAATGAGTTGAAGAAA ATAAGATTGAGAAACCAGAATCACACAGTTGACTAACAGAAGCAAGACTTAAAGTGAGGTTAGGTATATAATAAACATCAGAGAGAGAGAGTTTAGGTGA AGAAACAGAACCAACTCCTTCCAATAACATAGGAGTTCCATCAGTAGTCATAACATATACACAGGACGACATATGTACAGATGTAAAAGATTTAAAGTCA GATGACATATGATGGGACGCTCCAGAGTCAAGGATCCATATGGAGGATGATATACCTGATGAACCAGCAGAAGACAGACCTACATTAAGAGAGACTGACA TAGCATTGGGCTGCGATGCAAGAAACTTCTGAAATTGTTCTGCCATGTCAGACATGTTAGACCCAAAGTGAACCATCCCAAGGGTGGCAGATGGAGAAAC AGCAGTAGCAGCAGCAACATTGGAAGAGTGAGATGTGTGCTTAAAGTTCCTGTATTTCGACTGAGGCGGACGCCACTGAGGTGGTTGATGAGGTTGCTCC TTCATCAATAATTTTGGACATTGAGCCTTCCAATGACCCTTTTCCTTACAGAAGCTACATTCATCATAATTGACTCTCCCTTGAGATTTTCCTTTCACAA CAGGAGCAGCAAACACAGAGGGGTTTGGCAGAATCCCTTTGTCAATAATTCCCTTTTCAGAGTGGGACTTCAAACGAACTTCTTCAACTAAAAGTTCATT AACAACAGAGTCAACAGATGGCAGAGGAGTGCGATGCAAAATGGAACCGCGGAGGCCTTCAAAATCATTCCGAAGAGCCATCAAAAACTGTACTACACGT TGTTGTTCCCGACGATCAGTGTACGATGTGAATGCTTGCAATTCTGCAGATTCAGTGGGGTGCCAATTGGTCCCAAAGATTAGTCATAGCAGAATAAAAC TCTTGGATGCTCATGCTATGTTGTTGGAGAGCTCAAATATCAATCTCTAACTGATATTGTTTTACAAAATTGGACTGCACATACAATCGTTTAAGGTGCT CCCAAACCTGAGATGCTGAATCATATTTTGCAAGTTGAAAACCAATAGATTGCGAAACAAAATTATTAGTCCAAGTAATAATTTTTGAGTTGTTCACTTC CCAAGTGTCTAACTCGTTTGCATAATTTTCAGTAGCACTATTTGTAGGTTTAACAAAAGTTCCAGAAACATATCCCACATTCGTTTACCAATCAGAAAAA TTTTCATCACATAACTCCAATATGCATAATTGGATGATCCATTTAGTTGCACACTAATGGATTGCGAAGAATCATCTCTTTCAGTTGCCATAACTAACAA GCACAACAAAAGGGAAATCGAAATTCAAAGGGAAAGAGAAACAAAAAAACCTAAATTGCGATCTGCGAACTGCGGAGGCTGATCTACCACGCGAAAGCTG TGGCCTTAGCAAACCTTGCTCTTGATACCATGTTAGATTAGTTGCATAGGAAGAGAGAAGGGAAAGGAGAAGAAGAAGAGAGAAGGGAGAGGAATGTAAT ATGGAATTGATAATGGAGATAAGGCCAAAGGGCCAATACATATAGGAAGTTAGGAAAATACAAAAGACAAGACTACCCTTTGCTAATAACTAAAATACAT TTAACATTCCCCCTCAAACTCAAGATGCGTTAATCGAAAGCATCGAGAGTTTGTTAGTCAAGAAACGAAAACGTTGAGTAGAATGAGTTTTGGTAAACAA ATCAACAATCTGCAACGAAGAACAAATGAAGGGTAAGGTGATGGTGCCATGTTGGAAGTGGTGACATGTGAAGTGATAATCAATCTCTATGTTTAGTACG CTCATGAAAGACAGAGTTATGAGCGATTTGAATAGCACTCTTATTGTCACAGTACATGGGAGTGGGTTCAGGTTGATCAACACCCAGAGAAGCAAGTAAC CAACACAACCAAACTATTTCAGCAGTGGTGGTTGCCATAGCACGATACTCAGCCTCTGTAGAAGAGCGAGAAATAACATCCTGCTTCTTACTCTTCCAAG ATATGAGAGAGTCTCCTAGAAAGATACAGAAACCTGTAGTAGACTTGCGATCAGTAGGATCCCCAGCCCAATCAGCATCTGAATAAGCAGACAATGTCAA GGAAGAAGTTGAAGAGAAAAGAAGACTCTGAAACTGAGTGCCTCGAAGATAACGAAGCATCCGAAGAACAGCTGCCCAATGAACAATAGTAGGAGAACTC ACAAACTGGCTAACAATGTGCACTGCATAAGCAATATCGGGTCTGGTAATGGTCAGATACACCAAACTACCAACAAGAGTGCGGTATAGAGTAGGTTCAG AGAGAGGAACACCATCATAAGATGTATATCTAGCATTAGTCTCAAGAGGACTGTCAACAACTTTAGTGTCAGAGAGACTAACCCGGTCAAGAATATCTGC AATATATTTCGATTGGGAAAGAAGATAACCCCTAGGAGATGAGGCTACTTCAATTCCCAAGAAATATCTAAGAGTACCTAAATCCTTCATCTCAAATTGT TCTACTAGTTGCGTCTTCAACTTTGTAATCCCATCAACATCATTACCAGTAATGATCATATCATCGACATATAAAGAGATGATAATGCAACCATGAGGAG TATTTCTGACAAATAAAGCAGAATCATATGGACTTGAAGAGAAGCCAAGAGAAGTTATCACAATAGAGAATTTCTCAAACCAAGTGCGAGGAGCTTGTTT GAGCCCATAGAGAGATTTTTGCAGCTTGCATACTTCCCTCGGATTATGAGAAACTCCAGCAGGAGGAACCATATATTTCTTCATGAAGATCACCATTGAG GAAAGCATTTTTGACATCCATCTGAGAGATATGCCATTGACGAACAGATGCAATAGCAATAAGAGTGCGAATAGTTGTCATCTTGGCAACAGGAGCAAAA GTTTCTTCATAATCCATGTCATATTGTTGAGCATATCCCTTGGCAACAAGACGAGCTTTGTAACGCTCAATAGAACCATCAGACTTGATCTTGATCTTAA AGACCCAACGAGAACCTATAGCACGTTTCTCTGGTGGTAGAGACACCATAGTCCAAGTACCTGTTTGGTGCAAAGCAGAAAGTTCATCGTCCATAGCCTG CTGCCAAAGAGGATCAAGAACAACCTCTTGATAGGAGGAGGGCTCAGATAACCTGTGGAGAGAGGTCAAAGCAGAAGCAAAAGAAGTAGAATAAATGTTG TAAACAAAGTCAGGTAGCTGAGTGGACTTATGGATACGTTGAGGATAAGGACGAGGAAGAGGAGGTGGTTGAGGATGAGGATCACCAATCTGCAGAGGGT CATGGGCAACAAACAGATCAATATGAATGAGATCAGACCTGGTAATGTTTTGAGAGTCAGATGGAATAGAATAAAAAGGCAAATGCTCAAGAAAAACAAC ATGACAAGAAATATACAATTTACGAGTAGAAGGATTATAACAACGATAACCTTTCTGACCATCCCCATAACCAAGAAAGACACATATGGCAGATCGAGGA GTCAATTTACTCCGTTCAACATGAGGAAGAAGAACAAAACAAGTGGAACCAAAAACCCTCAATGATGAATAATTAGGAGGATGACCATACAACCTTTCAA AAGGAGACAAACTTGAAGTAACGGAAGAAGGAATTCTGTTATTGATATGAACCGCAGTTTTGAGAGCCTCACCCCAGAACTCAAAAGGAGCTGATGCTGA AAGAAGCATAGAACAGGCTGTTTCAAGAATCTCACGATGCTTTCTTTCAGCAACTCCATTTTGTTCAGGGGTGTCAGTACAAGAGGCTTGGTGAACTGTT CCATCAGAGGAAAGTAACTCAGAGAATTTGTTAGAGGTGTATTCACCACCTAAATCGCAGCGGAAGCATTTAATAACAGAGTTATATCGAGTATTAACCA AAGCACGAAAATAGCAATAAATACCAAAGAATTCAGAACGATGTTTCATAAGAAAAATTCAACAATAACGGGTGTAAT
• Tissue: pods
• Gene name: LI_gene_157355;
• Additional information: -

Expression of Ll_transcript_327225

FPKM

• PAB: 0
• PNAB: 0.1
• PS1: 0.1
• PS2: 1.2
• PS3: 0.5
• PW1: 0.4
• PW2: 0.2
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_327225

• Blastp: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 37.1% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 36.11% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019439031.1)
• Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) (PF07727.13)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;