Ll_transcript_327319

• Id Trinity: TRINITY_DN48002_c0_g2_i1
• Name Transcript: Ll_transcript_327319
• Sequence: CACTACTGCACACAACTGTGATATTTCTGTTAATAACAATGCTGTCCATAATGCTTCTGTTAGTAATAATGCTGTCCAGAATGCTTCTGTTAATAGCAAT GTTGTCCAGAATCCTGCTGTTCCCACAGAAACAGAGGCTATTGGCACATGTGAAGCTGAGACAGACACGTTTGACATACAAGAGGATGGCACAAGTCAAG ATAATGAGCCTGCCCTCAGAAAATCCCTTAGAGTAAGATCAAGGCCCCAATATCTGCAGGATTATCATTGTGCATTAAACACCTCTACTTCTAATTCTGT TCCAGCAAAACATTCTCTGGTCAGGTACCCTCTATCCAATAGCATTTCTTATAACAAACTCTCTGACACTCACAAACGTTTTTCACTTGCAATATCCTCT TTTAATGAACCAGAAAGCTACACAGAAGCAATTAAGCATGCTTGTTGGCAAAAGGCCATTCAAACCGAACTTGATGCCCTTAAGGCAAACAATACCTGGA CTTTAACTACACTTCCTAACACTAAAAAGGCTATAGGATGTAAATGGGTTTTCAAACTCAAATATAAGTCTGATGGCACAATAGAAAGGCACAAGGCAAG ACTTGTTGCCAAAGGATTCTCTCAAACCGAAGGGCTTGATTATTTAGAAACATTTAGTCCTGTTATTAAAATGACTACCATTAGAGCCATCTTAGCCTTA GCTGCTGCCAAAAATTGGCATTTGTATCAATTAGACATTAATACTGCCTTCTTGCATGGTGACTTAAAGGAAACAGTTTATATGAAAATTCCCCCAGGCC TAAACATAGAACATTCAGGTTTAGTTTGTAAACTTCAAAAATCTTTGTATGGTCTTAAACAATCTAGTAGGCAATGGCATGAAAAATTAACTAGCACTTT GATTGAAATTGGTTATGTTAAATCCTCTGCAGATTATTCTTTATTCATTAAATCCACTAATTCTGATTTTACTGCTATATTAGTATATGTAGATGATCTT ATTCTGGCAGGGAATAGTATTTCTGAAATCAATCATGTTAAACATATTCTAAATTGCAAATTCAGTATCAAGGACTTAGGGCAATTAAAATATTTTCTAG GAATTGAAATAGCAAGATCTACTAAAGGTATCTTACTTTATCAAAGAAAATATACACTTGATTTGCTAAAAGAAACAGGTATGCTTGCTTCAAAGCCAAG CTCAACTCCTATGGATTACACAAAGCAATTGATTGGGCAAGATTCAGGTACTCCCCTTCCTAATCCTAGCATATACAGGAGACTTATGGGTAAGCTTCTA TACTTAACCCACACTAGACCTGATATATGTTTTTGTGTTAGTCATTTAAGCCAATTTCTATCTAATCCTACTGATAAGCACTTTGAGGGAGCCAAGAGGA TATTGAGATATATCAAAGGCTCTATCAGTATTGGAATTTTCTTTGCATCTAATTCTGATTTCAGGTTGAGGGGATACACAGATTCAGACTGGGCAGGTTG TCCTGACTCAAGAAAGTCTGTTTCTGCATATTGTTTCTACCTAGGAAGCTCATTGATCTCTTGGAAAAGTAAGAAGCAACAAGTAGTTGCAAGATCATCT GCAGAAGCAGAGTATAGGGCCATGGCCCTTGGTTCATGTGAAGCTCAATGGCTGATCCATCTGCTAAGAGATTTACACATTCAGCATCCCCAACCCATCA TCATATATTGTGACAACCAATCAGCTATTTACATAGCTTCAAATCCCGTCTTCCATGAGAGAACAAAACACATAGAGGTGGATTGTCATACTGTCAGAGA AAAGATTCAAAATGGATTAATACATCTATTATCCATTCCTACAAATTCACAAATTGCTGACTTGTTGACCAAAGCTTTATCACCACAAGTCTTCCATCGG TTACTTTCCAAGCTTGGAATGTTCGATATCCACATCCCAGCTTGTGGGGGCCTGTTAGAATCAACAAGCACTTCCAAGATCTTGGAATCTTCTTGAGTAT CTTTGTTTGTTTGGGTTTTTCTTTATTGGCCCATTTTTCTTTTGTTGTTATTAGTTGGGTTTTCTGTTTTTTGTTAGTTTTGCCCAACTAATATTTGTTT CTGTTTTGCCTTTGTTAAATACTTGTTTTCTGTACCATTTTCAAATCATCAATAAAATTCACTTTTTACTTTACTGAACAAAGCCATCGTCACTATTTCT CTTTTCTTCATCCTCTTCACCTAGGGTAAATGGGGTACCATGTTTAACATGGTATCAGAGCATTACCTCCGAATATCATCATTCATCGTTCACATCGCCT CCGCTGTAATTGTTTTCGTACCCTAGTTCATCCGATCTTCACCGATTCAAGCATCTCCATTTTTCTTTCTTCTCAACGTCGCTATGGAAAATCAAGCGAT CCAGATCATCAATCCCTTCCACGATCCAACATCACCATTCTACATGAGTTCCAATGATAATCCCGGAGTTAGTATCGTCTCCAAAACCCTCAACGGTGAT AACTACCACGATTGGGCTCGTGCCATGGCCAGATCTTTGAAATCCAAGAACAAGCTTTCATTCATAGATCATTCTCTCCCAAAGCCAGATGTTGATGATC CTTCATTCATATATTGGGATAGGTGTAACACTATTGTGGTTTCATGGCTCATTCAATCAATGGATCCATCTATTGCTCAAAGCATACTATGGATGGACAC AGCTTTGGAAATTTGGGAGGACCTCCGTGAAAGGTATCACCAAGGGGATGTATTTCGGATTATAGAACTTCTTGCTCAAATCTATACTTACAAGCAAGGT AATCTTAGCATAAGTGCCTACTATAATCATAGAAAAGGTTTGTGGGAGGAATTAGAGGATTTCAGACCAATTCCTTCATGTTTATGCATACACAAGTGCA CTTGTGCCCTGATTCCCATAATAAAGGGATATAGAGAAAGCGACTATGTCCTATGCTTCTTGATGGGTCTTAATGATCAGTATGAGGGGGTAAGGTCTCA GATTATGTTAATGGACCCATTACCATGCATCAACAAGACGTTTGCTATGCTTACAAGGCAAGAGAGACACATTATGTCACATTATAATGAGCCCAAGATT CTCATGAATGCTACTGAAAATAACTACAATGGCAACACCGAAGTTAATTCCAATTCAAGATTCAGCAAGGGCAGGGGCAGAGGAAGAACAACCCAGAACC AACAAGGAAGAGGACCAGGAAGAAATCAAAATAATAGAGGAAACAAATTATGTACATACTGCCATAAATCAGGTCATACAATAGACCAATGCTTCAAGAA ACATGGTTTTCCCCCGCCTGGAAGCTTCAAGAACTACAATATAAACAATTTGACTACCTCTGATGAGGAATTATGCAACATGGATAACACAGAAACAAGA AGTCAATCTGGCCTTAACAAATCTGATGGACAATCTCCTATAATGAGCTTCACTCCTCAACAACACCAAGCAATCTTATCCATATTGCAGCAATCACCAT CAATGACTCCTCACAATGCCAACCAGATTAGTACACAGTCTACTAATATAAGCAACAAAGGATCTCCCATCATTGAAGATGATTGGTGCAGCTGAATTAA GGGATGGTCTCTTTGTAATGAGAGGTTCTGTAAAGACTTTACCTATCCTAACTCATAATAGTAGTAGCAATATCAATACTTTTACCTCTTATCATAATGA TGTATGGCACAATAGACTAGGTCATCCCTCACATGATAAGCTGATTACTATGCAAGGTTATTTTTCTTATATCAAATGTAGCAAAAATATGAATCCTTGT CATGTATGCCATTTAGCCAAACAAAGAAAAATCCCATTTAAAAACAGTGTTTCTAAATCTGTTAATATGTTTGATTTGGTCCACATGGATATATGGGGTC CTTTTTATATTCCTAGCACCTCAGGCCATAGGTATTTCTTGACCATTGTAGAGGATAAATCTAGGTTCACTTGGTTGTATTTCATGAAACTAAAATCAGA AGTATCTAATCTTGTTGAGAATTTTGCCTCTTTAATCCTCACACAATTTGGATTGAAAATAAAAGCTATAAGGACTGATAATGGGAAGGAATTTCTCCTA CATGAATTCTATGCCAAGAATGGCATACAACACCAAACTAGTTGTGTTGAAACACCCCAACAAAATGGGGTGGTTGAGAGGAAACATCAACACCTATTAG GTGTTGCTAGAGCCCTAATTTTTCAATCCAACTTACCTCACTGTTTTTGGGATTTTGCCTTAGCTCATGCTGTTTATCTAATAAATAGACAACCAAGCAA TCAACTTGATAAACTAAGCCCTTTTCAAATATTGTATGAGAAACTGCCAAATATATCACATTTAAGGATTTTTGGTTGTCTATGCTACATTGCTACCATA TCTGCTAATAGGAAGAAATTAGATCATAGGTCCAAGAAGTGTGTGTTTCTTGGTTTTAATAAAGGTGTCAAGGGTTACATAGTTTTAGATACTAATAATC ATGAAATATTTGTATCTAGGAACATTATCTTTTATGAGCATATTTTTCCTTTTCATGGAATCACTCACAATGAGAAAGAACCACATTTTATACTGCCTAT TGAAATTACTAATGCCAATTGGATACACCCGGAGATCACTACTGCACACAACTGTGATATTTCTGTTAATAACAATGCTGTCCATAATGCTTCTGTTAGT AATAATGCTGTCCAGAATGCTTCTGTTAATAGCAATG
• Tissue: pods
• Gene name: LI_gene_157363;
• Additional information: details;

Expression of Ll_transcript_327319

FPKM

• PAB: 0
• PNAB: 0
• PS1: 0
• PS2: 0.7
• PS3: 0.7
• PW1: 0
• PW2: 0
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_327319

• Blastp: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 36.56% of identity
• Blastx: Copia protein from Sophophora with 40.22% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019432846.1)
• Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) (PF07727.13)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;