| Id Trinity | TRINITY_DN48005_c0_g1_i6 |
|---|---|
| Name Transcript | Ll_transcript_326302 |
| Sequence | TGCATTGAGACTCAAATACAGTGTTCTTCTTCCACAAAGTAACTTAGTTTTGTGGATAATAATGTTGATAACAATCACTGAAGCTTCTTCTTCTCCCCTT TGTTTCTTCCTTAATCGTTTCAACACAAAACCCTCCAAAACACTAAGAAATTTTCCCATTTGCCAAGCCAGTTTCTCTGTACAGAGAAGACCCAACACTA CCCACTCTTGGAATCAACCCCATCTCTCTACTACCAGCTATGACGTGGCAAATTTTGATCCCTTGGATATTAACTCGGATTTATCTTCTGCTCTGAGTTC TACCTGGGAAAATCTGGTCTCCTTGTTTTCGCAAACATTTGAGAGTGCTTCAAATACAGAAAAGGAAAGACCTAACACTGCTCGAGGAGCAGCAGCTGCA ATAGAGGACAGTTCAATTGATTTTGGCGACTTCTTTAAAGGTCCCCTCCCTGGAAAATTTCTCAAGCTTTTAGGGTTTCTTGCCTTGTCTCGGCTCGGTG TGTACATACCTCTAGGTGGGGTTAATAGGGAGGCTTTTGTTGGAAATTTGGACCAAAATAGTTTATTAAGCACTCTCGACTCATTTTCCGGAGGAGGAAT TGGTAGACTTGGGATATGTTCGCTTGGTATCGTTCCCTTCATCAATGCACAGATTGTTTTCCAGCTTCTTGCACAAATATATCCCAAGTTGCAAGATCTT CAGAAAAAAGAAGGTGAAGCTGGAAGAAAGAAAGTTCTTCAGTACACTCGATATGCTTCAGTTGGATTTGCCATTGTACAGGTCAGTAATTAATTACACT GCCAAATTTGTGACAAGCTTTTGCTTGGGATTACATGAATTATTGTTTTAAGGGAAATGTGCATCAAACTCCATAAAATTTATCTCTTTTTCAAGTAGAT ATCATAAATTTTTTTTCTTCCTAATTACTCCTTAGACTTTATCATTTTGTGAAATTGGTCCATGCATAAATATATTGTTAAATAAGTCATAAATAAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_157386; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_326302
| Blastp | Preprotein translocase subunit SCY1, chloroplastic from Arabidopsis with 76.33% of identity |
|---|---|
| Blastx | Preprotein translocase subunit SCY1, chloroplastic from Arabidopsis with 76.33% of identity |
| Eggnog | The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently (By similarity)(COG0201) |
| Kegg | Link to kegg annotations (AT2G18710) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019415337.1) |
| Pfam | SecY translocase (PF00344.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |