Ll_transcript_327616

• Id Trinity: TRINITY_DN48012_c2_g1_i1
• Name Transcript: Ll_transcript_327616
• Sequence: GTCAGGCCCTATACTGAGCCCATGGCCATTAAGTTGATCTTGTTGCGCAAGAAGGCAGAGTTATTTAAATATAGTGAGAAAGAGAGAAGAGAGTTGGTAG TGTAATCGAAGGAAGAAGAATAAGAAGAAGAAGAAGAAAAAGAAGATCTGAAAGTGAAGAGATGGAGTGCGTATTCGGATTGGTAGGGAATGGATTCGCG ATAGTTGTAGCTGACACATCTGCTGTTAATTCTATCTTAGTCCACAAATCCAACGAAGACAAGATCATGTTCCTTGATTCTCACAAACTCATCGCCGCTA GCGGTGAACCCGGTGACAGGGTTCAATTCACCGAGTATATACAGAAGAACGTTGCGTTGTATCACTTCCGCAATGGCATCCCTTTGACCACCGCCGCCGC CGCCAATTTCACCCGCGGTGAGCTCGCCACCGCTCTCCGTAAGAATCCATACTCCGTGAATGTCCTTCTCGCTGGTTACGACAAGGAGACTGGCCCTTCA CTCTACTACATTGACTACATTGCAACACTTCACAAGCTTGAAAAGGGAGCTTTTGGTTATGGCTCCTATTTTTCGCTGTCATTGATGGACAGGCACTTCC ATAGTGGAATGTCGGTGGAAGAGGCAGTTGATCTCGTAGATAAGTGCATTCTGGAAATTAGATCAAGGTTGGTTGTGGCACCTCCAAACTACGTGATCAA AATTGTTGACAAGGATGGGGCAAGAGAGTATGCTTGGCGCCAGTCCGTTAAGGACACTCCCGCTCCCACAGCTTAAAAATAACTATGTTCCTTGTCTTTG ATTGAACTTATCTAAATTTGCCCATTATCTTTTATCTTTTCACTTGCTCTTACTGTGGTCTCTCTGAAAATCATGGTCTCTAAATGCTTGAAAGTAAGAC AGTTTGTGTTTTGAATTTATATGTATGATGATTAGTTCTATTCAGAAGTAGCATTGTGACAATTTATGAGGCTTGCCTGATTTTAGTCCACCCCAAGTTG GGAATTCTGAAAATTGGAGAAATAGATAAAGTGCTTGAAATAATACAGGACTTATGAACTGTTAAATGACCCGGTGAAAATTGGGAGGATCATTGATGAG GTTGCTGATTTCATGTGCCTTAAATATGATACAAATCCAATTAGATCTTTCCTAACGTTATAGTTACTATGCCTTAATACGCCCCAAGATCTGGATTCAT CTTTCCTCTCAAGTTAATTTTGTTGTAAGTTTAAAATCTGAATAATGTTATATCTTCCTACTAATCCTCTTGTCCACAAAAAAAGTGACAAATGTCATTT GTAAACCAATTATTAATAACTAAAGTATCATTTTG
• Tissue: pods
• Gene name: LI_gene_157465;
• Additional information: details;

Expression of Ll_transcript_327616

FPKM

• PAB: 85
• PNAB: 90.4
• PS1: 102.5
• PS2: 52.7
• PS3: 82.7
• PW1: 63
• PW2: 49.2
• PW3: 42.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_327616

• Blastp: Proteasome subunit beta type-2-A from Arabidopsis with 87.88% of identity
• Blastx: Proteasome subunit beta type-2-A from Arabidopsis with 87.88% of identity
• Eggnog: The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (By similarity)(COG0638)
• Kegg: Link to kegg annotations (AT3G22630)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019444570.1)
• Pfam: Proteasome subunit (PF00227.25)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;