| Id Trinity | TRINITY_DN48031_c2_g1_i14 |
|---|---|
| Name Transcript | Ll_transcript_328400 |
| Sequence | ATAAGAATAAGTATTTCTTTCATCTTTCATTTTTCCATTTTTTCCATTTTTTCCATTTTTCAATTTTCAATGCTATCGGTGTATAAAATAAGCTGCTCTC ATAACCACACACTCGCACATAACACCTTCATCCTTTTTCTCTCTCAATTCGCCTTTACTCTCTTTATCACATTCTTCCTCTTCAGATGGCAGCATCATCA GCATGTCTTGTTGGGAATGCTTTATCTACTCCTAATAACAGAAAAACTTTCGGCAAGGACTTAAATCGCAGATATCTCTTCTCATCATTGAGACGTTCTT CATCGAATAAGGGATCGAACTCAAAAGCAGTATTCATAAAGGCTTCCTTGGACCAAAGTCAGGATGAAGGGAGAAGGGGGTTTATGAAATTGTTGCTTGG AAGTGCAGGAGTTAGCTTACCTGCATTGTTGGGAAGTGGAAGCAAAGCTTATGCAGCTGATGAACAAGGTGTTTCCTCTTCCAGAATGTCTTACTCCAGA TTTCTCGAATATTTGGACAAGGATAGAGTTAACAAAGTGGATCTGTATGAGAATGGAACCATAGCTATTGTCGAAGCTGTTTCTCCCGAGTTAGGTAATA GGCTCCAGCGTGTTCGAGTTCAACTTCCTGGACTTAACCAAGAGCTCCTTCAGAAATTCAGGGAAAAAAACATTGACTTTGCAGCTCATAATGCTCAAGA AGATTCAGGTTCTCTTCTATTTAACCTTATTGGGAATCTAGCTTTCCCTCTACTCTTGATTGGAGGATTGTTCCTCCTCTCAAGACGACCCGGTGGGATG GGAGGTCCCGGTGGACCTGGATTTCCTCTTACTTTTGGTCAGTCTAAAGCCAAGTTTCAAATGGAACCAAGTACTGGAGTGACATTTGATGATGTTGCTG GGGTGGATGAAGCCAAGCAGGATTTCATGGAGGTGGTTGAGTTTCTGAAGAAGCCTGAAAGGTTCACTGCTGTTGGAGCTCGTATACCAAAAGGAGTTCT TCTTGTTGGTCCTCCAGGAACAGGGAAGACACTGTTAGCCAAGGCTATTGCTGGTGAAGCTGGTGTTCCATTTTTCTCAATCTCCGGTTCTGAGTTTGTT GAGATGTTTGTCGGTGTTGGTGCTTCTCGAGTACGTGATTTGTTCAAGAAGGCCAAAGAGAATGCCCCATGCATTGTTTTTGTTGATGAAATTGATGCTG TTGGAAGACAAAGAGGGACTGGAATTGGAGGAGGGAATGATGAAAGAGAACAGACCCTCAACCAACTTTTGACAGAAATGGATGGGTTTGAGGGTAATAC TGGTATCATTGTTGTTGCAGCAACTAACAGAGCTGACATTCTTGACTCTGCCTTATTGAGACCGGGTCGGTTTGACAGACAGGTAACAGTTGATGTTCCA GATGTAAGGGGAAGGACTGAAATCCTAAAGGTTCATGGTAGCAACAAAAAGTTTGATGCTGATGTTTCTCTTGAAGTAGTTGCAATGAGAACACCTGGTT TTAGTGGAGCTGATCTTGCAAATCTTCTGAACGAGGCTGCTATATTAGCTGGTCGACGTGGAAAGACAGCAATCTCATCTAAAGAAGTTGATGATTCTAT CGATAGGATTGTGGCTGGAATGGAAGGAACAGTAATGACAGATGGGAAGAGCAAAAGCTTAGTGGCATATCATGAAGTTGGGCATGCCATTTGTGGAACT TTGACTCCTGGTCATGATGCGGTACAAAAGGTAACACTAGTTCCCCGTGGTCAAGCTCGGGGTCTTACATGGTTCATTCCTTCTGATGACCCAACTCTGA TCTCCAAACAACAACTCTTTGCAAGAATTGTTGGAGGGCTAGGTGGTAGAGCTGCGGAGGAAATTATTTTTGGTGAACCAGAGGTTACAACTGGAGCAGC TGGTGATTTGCAGCAAATTACCGGTTTGGCAAAACAGATGGTAGTTACATTTGGAATGTCTGATATTGGTCCATGGTCACTTATGGACGCATCACAAAGT GGGGATGTTATCATGAGAATGATGGCAAGGAACTCAATGTCAGAAAAGCTTGCGGAAGACATTGACGCAGCAGTCAAGAGACTCTCCGACGAAGCATATG AAATTGCATTGACCCACATAAGGAACAACCGCGAGGCAATTGACAAGATTGTGGAAATCCTTGTGGAGAAGGAGACATTGACCGGAGATGAATTCCGTGC TCTACTGTCTGAGTTTGTTGAAATCCCAACTGAAAACAGGGTCCCTCCTTCAACTCCAGTACCAGCCACTGTTTGAATAGCCCAGATATAATATCTGTAA TATGTATATCTCAGAATACCTCTACGGTATGTTTGTGAATGATAAAACTCCTAGTTCACTTCTTTACTCGTGTAGTGTTGTTGACAATAGAGTATGTGCC AAAGAGCAAATGTTTGTGTGTAAAAATTCAAAGCTTCTTTACACCTATATATAATACAGTGTAACTTTTCTGATTAATTCCTGGTGTATCATTATAACTA GTGAGATGCAATGTCTAATATGAGTGCAAATTCTTTGTATTTGTGAAGTCTGGTTTTTTGACACCAATGTAAAGGATGGTAAATCTGGTTGGGTATCAAA TTTTTGAGATGGGTTTTATCAGCAAGATGGTATATCAAGTACTGAAGGAGACAGAAATGGACTTGATTGTAGCAATGGATGGCTAAGAGGAATTGCTGCA ATCAAAGTTTGCTTATTATAATAAATAATTAAATTTAAGGATTTCATTG BLAST |
| Tissue | pods |
| Gene name | LI_gene_157596; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_328400
| Blastp | ATP-dependent zinc metalloprotease FTSH 2, chloroplastic from Arabidopsis with 83.91% of identity |
|---|---|
| Blastx | ATP-dependent zinc metalloprotease FTSH 2, chloroplastic from Oryza sativa with 88.3% of identity |
| Eggnog | Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins (By similarity)(COG0465) |
| Kegg | Link to kegg annotations (AT2G30950) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019463650.1) |
| Pfam | FtsH Extracellular (PF06480.14) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |