Ll_transcript_328389

• Id Trinity: TRINITY_DN48031_c2_g1_i3
• Name Transcript: Ll_transcript_328389
• Sequence: CTAATCTCAAATAAAAAAGATTTATTGTTGACATGACAGGGAAAGAACTTGAAAACCCCAACCAAAAAATCTTAGTTTTGGAGTGTCAAACTGAGGTTAA AGAGCAAGAATAGGCAGCGGTTTTTTATTCTTCGCACCCTCTGTCTCTTTGAACCTTCGTTTAAAGCCTCTATGGCATGTCTTGGTGGGACTGGTTTATC TACACATAGTAATACAATAGCTTTTAAAAAGGACTTCAATGGAAGATATCTCTTTTCATCTTGTACACTTCAATCATTGAATAAGGAATCAAAGACAGTA TCCAAAAAGACATCCTTGGATCAAAAGAAGCATGAAGGAAGAAGAGGATTTCTGAAATCGTTGAACATAGGAATCGGCTTACCCACATTATTGGGTGGAA AATCATATGCTGATGAACAAGGAAATTCTTCCTCCAAAATGTCTTACTCTAGGTTTCTTGTGTATTTGAACAAGGATAGAGTTAGAAAAGTGGATCTGTT TGACAATGGAACCATAGCGGTTGTAGAGGCTGTTTCTCTTGATAATAGGGTGCAACGATTGCGAGTTCAACTTCCTGGACTTAGCCGAGAGCTCCTTGAG AAATTCAGGGAAAAGAATGTTGACTTTGCAGCTCATAATGCCCAAGAAGAGTCAGGTTCTCTGTTATTCAACCAGATTGGGAATCTGGCTTTCCCTCTAA TCTTGATTGGAGGGTTGTTCCTTCTCTCAAGACGATCACCTGGTGGGATGGGAGGACCTGGCAGGCCTGGCTCTCCTCTTGCCTTTGGTCAGTCCAAAGC CAAGTTTCAAATGGTGCCAAGTACTGGAGTGACGTTTGATGATGTCGCTGGTGTGGAGGAAGCCAAGCAGGATTTTATGGAGGTGGTGGAGTTTCTGAAG AAGCCCGAGAGATTCACTGCTGTCGGCGCTCGCATACCCAAAGGAGTTCTTCTTGTTGGTCCTCCAGGAACTGGGAAGACGCTATTAGCGAAGGCTATTG CTGGTGAAGCAGGTGTCCCATTTTTCTCAATCTCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTGTCGGTGCTTCTCGAGTCCGTGATTTATTCAAGAA GGCCAAAGAGAATTCTCCTTGCATTGTTTTTGTTGATGAAATTGATGCTGTTGGAAGGCAAAGAGGTACTGGAATAGGTGGAGGGAACGATGAAAGAGAA CAGACACTTAACCAACTTTTGACAGAAATGGACGGGTTTGAGGGTAATACTGGTGTCATTGTGATTGCAGCAACTAACAGAGCTGACATTCTTGACTCTG CTTTATTGAGACCGGGACGGTTTGATAGACAAGTAACAGTTGACGTTCCAGATATACGGGGAAGGACTGAAATCCTAAAGGTTCATGGTAGCAATAAAAA GTTTGATGCCGATGTCTCTTTGGAGGTAATTGCAATGAGAACACCTGGTTTTAGTGGAGCGGATCTGGCAAACCTCTTGAATGAAGCTGCTATATTAGCT GGTCGGCGTGGAAAGACAGCAATTTCATCCAAAGAGATTGATGATTCTATTGATAGGATTGTGGCTGGAATGGAAGGAATGGTGATGACCGATGGGAAGA GCAAAAGTTTAGTGGCATATCATGAAGTTGGGCATGCCATTTGTGGAACTCTGACTCCTGGTCACGATGCTGTACAAAAGGTCACGTTAGTCCCACGTGG GCAAGCTCGTGGTCTCACTTGGTTCATTCCTTCTGACGACCCAACTCTGATCTCTAAACAACAACTCTTTGCAAGAATTGTTGGTGGACTAGGTGGTAGA GCTGCAGAGGAAATTATTTTCGGAGAGCCTGAGGTCACAACTGGAGCCGCTGGTGATTTGCAGCAAATAACCGGTTTGGCCAAACAGATGGTAACGACAT TTGGAATGTCTGATATTGGTCCTTGGTCACTTATGGATACCTCAGCTCAAAGTGGAGATG
• Tissue: pods
• Gene name: LI_gene_157596;
• Additional information: details;

Expression of Ll_transcript_328389

FPKM

• PAB: 0.6
• PNAB: 1.3
• PS1: 1.1
• PS2: 0.9
• PS3: 0.9
• PW1: 0.6
• PW2: 1.3
• PW3: 3.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_328389

• Blastp: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic from Arabidopsis with 83.14% of identity
• Blastx: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic from Oryza sativa with 86.87% of identity
• Eggnog: Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins (By similarity)(COG0465)
• Kegg: Link to kegg annotations (AT2G30950)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019418270.1)
• Pfam: TIP49 C-terminus (PF06068.12)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;