| Id Trinity | TRINITY_DN48031_c2_g1_i8 |
|---|---|
| Name Transcript | Ll_transcript_328394 |
| Sequence | CTAATCTCAAATAAAAAAGATTTATTGTTGACATGACAGGGAAAGAACTTGAAAACCCCAACCAAAAAATCTTAGTTTTGGAGTGTCAAACTGAGGTTAA AGAGCAAGAATAGGCAGCGGTTTTTTATTCTTCGCACCCTCTGTCTCTTTGAACCTTCGTTTAAAGGAATCAAAGACAGTATCCAAAAAGACATCCTTGG ATCAAAAGAAGCATGAAGGAAGAAGAGGATTTCTGAAATCGTTGAACATAGGAATCGGCTTACCCACATTATTGGGTGGAAAATCATATGCTGATGAACA AGGAAATTCTTCCTCCAAAATGTCTTACTCTAGGTTTCTTGTGTATTTGAACAAGGATAGAGTTAGAAAAGTGGATCTGTTTGACAATGGAACCATAGCG GTTGTAGAGGCTGTTTCTCTTGATAATAGGGTGCAACGATTGCGAGTTCAACTTCCTGGACTTAGCCGAGAGCTCCTTGAGAAATTCAGGGAAAAGAATG TTGACTTTGCAGCTCATAATGCCCAAGAAGAGTCAGGTTCTCTGTTATTCAACCAGATTGGGAATCTGGCTTTCCCTCTAATCTTGATTGGAGGGTTGTT CCTTCTCTCAAGACGATCACCTGGTGGGATGGGAGGACCTGGCAGGCCTGGCTCTCCTCTTGCCTTTGGTCAGTCCAAAGCCAAGTTTCAAATGGTGCCA AGTACTGGAGTGACGTTTGATGATGTCGCTGGTGTGGAGGAAGCCAAGCAGGATTTTATGGAGGTGGTGGAGTTTCTGAAGAAGCCCGAGAGATTCACTG CTGTCGGCGCTCGCATACCCAAAGGAGTTCTTCTTGTTGGTCCTCCAGGAACTGGGAAGACGCTATTAGCGAAGGCTATTGCTGGTGAAGCAGGTGTCCC ATTTTTCTCAATCTCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTGTCGGTGCTTCTCGAGTCCGTGATTTATTCAAGAAGGCCAAAGAGAATTCTCCT TGCATTGTTTTTGTTGATGAAATTGATGCTGTTGGAAGGCAAAGAGGTACTGGAATAGGTGGAGGGAACGATGAAAGAGAACAGACACTTAACCAACTTT TGACAGAAATGGACGGGTTTGAGGGTAATACTGGTGTCATTGTGATTGCAGCAACTAACAGAGCTGACATTCTTGACTCTGCTTTATTGAGACCGGGACG GTTTGATAGACAAGTAACAGTTGACGTTCCAGATATACGGGGAAGGACTGAAATCCTAAAGGTTCATGGTAGCAATAAAAAGTTTGATGCCGATGTCTCT TTGGAGGTAATTGCAATGAGAACACCTGGTTTTAGTGGAGCGGATCTGGCAAACCTCTTGAATGAAGCTGCTATATTAGCTGGTCGGCGTGGAAAGACAG CAATTTCATCCAAAGAGATTGATGATTCTATTGATAGGATTGTGGCTGGAATGGAAGGAATGGTGATGACCGATGGGAAGAGCAAAAGTTTAGTGGCATA TCATGAAGTTGGGCATGCCATTTGTGGAACTCTGACTCCTGGTCACGATGCTGTACAAAAGGTCACGTTAGTCCCACGTGGGCAAGCTCGTGGTCTCACT TGGTTCATTCCTTCTGACGACCCAACTCTGATCTCTAAACAACAACTCTTTGCAAGAATTGTTGGTGGACTAGGTGGTAGAGCTGCAGAGGAAATTATTT TCGGAGAGCCTGAGGTCACAACTGGAGCCGCTGGTGATTTGCAGCAAATAACCGGTTTGGCCAAACAGATGGTAACGACATTTGGAATGTCTGATATTGG TCCTTGGTCACTTATGGATACCTCAGCTCAAAGTGGAGATG BLAST |
| Tissue | pods |
| Gene name | LI_gene_157596; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_328394
| Blastp | ATP-dependent zinc metalloprotease FTSH 2, chloroplastic from Arabidopsis with 89.74% of identity |
|---|---|
| Blastx | ATP-dependent zinc metalloprotease FTSH 2, chloroplastic from Oryza sativa with 87.88% of identity |
| Eggnog | Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins (By similarity)(COG0465) |
| Kegg | Link to kegg annotations (AT2G30950) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019418270.1) |
| Pfam | TIP49 C-terminus (PF06068.12) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |