| Id Trinity | TRINITY_DN48092_c2_g1_i11 |
|---|---|
| Name Transcript | Ll_transcript_328148 |
| Sequence | AAATGATATTTCGAACAATCTCGAAATTCATAATTTTTTTAGTATAAATAGCAATTTCTCATTCTCATTCTCATTCTCGTTTTTGTTTCATATCAAAATC CAGCGTTTCGAAACGGAGCTTCGTGCCAATCGCAATCGGAGTCGAAAGTTCGTTGTGCCGTTTCGTAATAATTTTGTGTCGTTTCTTAACTTTTGATGCT TTCGTTTTGTGTTTTTGAGTGATATATGATAATGTTTGTGTTGTTTTGTGTGTAATAACTCTTTTCCTTTTTGCTTTATCATGTTATATTTTGTGTTCTT TCACGCTAATTATTTATTTATTAATTGTGTATGATATTATTTCATTTTATAGTTTTTGAATTTTTATGCGGTAGTGTTTAGCATTTGTTTACAATAATCG TGGATTATTATCGGAAAATGTAGCTGATGTGATCGCAATCACATCAATAAATAGTAGCATAGACTTATGTATCATTGTGAATTGAGCCTCGACGCGATGG TTGTTTGTGTTGTGACATGAAGATCGTGTGTTCAAAATCCGGAAACAATCTGTTCAATTACGAGGGCAAGGTTGTGTACATCTATTATCCTCTGCCTTAC TTGGTTGGAGCCTAATATACTAATTAGGATGTGAGATTGCTAATTTTGGGAGGGTTAAAGTAGAAGAGTGATTAAGTAACATTAGATAGATTTTGTCTTT GTGAGTCATGAGGTGGTCATGGTGAAGATGAAGGTCTTAAAGGAATGGAGTGCTGGAGGTTGTGGGCTCAAATCCCACTATCTACAAAAAACGGAATTAT AAGGTGGTTAGGGTGAAGGAGATTGAGGTTGAAGTCTCACCCACAACAAATATTAACATACTAACGGTTTACATATTAAAAATTGCAGATAAAAAAAATG AAGATAGATTTTTGCCTACATAGCTAATGCTACAATGACACTTATTTTGAAGAAAGAGTGGAGTGACCAAAAGTATATCTCTGAACCCGTGTCCCTTTTG CCTATGCTACCTTTCAACAGCACTGTCTACTATGGTGCACAGTTTGGACTTTGCAGCCAGTTTTTTATGTTGCAAAATTTCCATTGTGCATGAGAAACTA CCCATTTTGTATACTGTCCCGTTTATGAACAGTGATGAGGCTGGCTTGATGTTATCCCTGAGGTATTAAAATGACGGTTGTCGTTGCGTTTCAAATACTT CCAAAACTTGACATTATCGACTATTTTTGGGTAAATGCAGTTGATGCATTCACAACTGTGATGTAGCACAGTTTTGGAAACCTTAATATTTTGATGCCAA TAACAGATGCGGACCCAGATTTAAAACCTTCGCCATCACACCCATTTTTCGGTCTCACATTTGATCACCTGTCCTACTCGCCAATTACCCCTTCTTCCAG CCTTTATTTTGTTTATGATGGTAAAAAGAATAGCCCTCATTACAAAGATAAGGACACTGTTCTTGAACATGGAGTTGAGTGAATTTTTGTTTTGGCAGTG AATTCATCTTTCACTGCCAACTTACCTAGATAATGAAGGATCCGTGATCTGATTTGACCAAAAATGACCTACCAAGGTGCAGAGATATGAAGTTTTTTAG TATTTGCTATTGGTAAGTTTCAGTTCTTGGAGGAAACAAAGCAGACCTGCCGATTAAGGTTGGAGTGTCTATTGGTTGGCTACAATATAATTGGATTTGG TTCTGGGAGTAGTGCTGATTGGAGCTGCATAATTCAATTTTGTTGTTGCTGATTTCAATTGGTCTGCGGCAGTGTAGAAGAAACCAAGAATACATTCGGT GTTTGCGTGGCTTGATGGGGTGACTAAATATGCCTTTAGAGGTTTTAGGACTATTTCTAAATGTGTTGCTACATGCAGGTCCCTAAGCTTCTAGATAGTT GGTAATCTTTTGCTAACATCATGGGAGAGGTGGCAGTAATGCACTCTGAGCCTCTGCAGTTAGAGTGCTATGGCATGAACCGTATGACTGAGAATGATGT GCATACTCCAAAATCAAATGAGCCCATGCCTGAAGAAGAATCAAATCAATCAACAGATGACATTAATATCATTGACTTGCAAGGGAAAGGGTACATGGAG CATGGATGTCAACATTACCGAAGAAGATGCCTAATCAGGGCCCCCTGTTGCGATGAGATTTTTGATTGTCACCATTGTCACAACGAGGCAAAAAATGATA CCAATATTGATCAAAAGCATAGGCACAATATCCCCCGCCACCAAGTCAAACAGGTGATATGTTCACTTTGTGGGACTGAGCAAGAGGTTCTTCCATATGT CTAGGCGAAACTGTTGGTGGTAGTTTCGTGACTTTCATCTCTAAGATATTGACTAGACAATATACCACTTGAAACTGCTGGGTTCAGCAAAACTGTATTA ATTGTGGTGTTTGTATGGGCAAATACTTCTGTGAGACATGCAAGCTCTTTGATGATGATATATCTAAACAGCAGTACCACTGCAGTGACTGTGGAATTTG CAGGTATGATATGCTAATCTGGTTATTTGTTTGAAATGTCAACACCACCACGCTTCATTTTAGGCCGGGGCAGCACATCGTTGTGTTTGGAACTGGGTGG TTGGTGAATTATTTTTCTTAGTTTTTAAAATTAATTTGATTATTTTAATTTTTCTATTAGAAAATCAAATTTAAGTTAGCCTCCTTCTATAATAATAATT TATTTATCTAGCTCAATCTGACATGGGGCAATTTCTTAAAAGTGGAAAAGCAATAGCATGTCCTTTTTCTGTTTTTTTCACTTGACTTTAAAGTCACATT CTTATTAAGTATATATTGTATCTTGCTTTTAGACTGACTGTGCCTTGTATTGAAATTCAGACTGATTGATTCTGATATTTTTAACGCAGAACTGGGGGAA GAGAGAATAATTTCCATTGCGATAAGTGTGGTTGTTGCTATTCAATTCTGCTGAAAAACAGTCACCCGTGTGTGGAACGAGCAATGCATCACGATTGCCC CATTTGTTGTGAGGTAACATTTTACAATTTTCATGATTCCTTCTTACCAGTTTGAAGAATTACTCAAGGCTGATTCAAGCACACTCAAATTTGTGAATGT AGTATTTATTTGAAACCACAAAAGATATCCTTGTTCTGCCCTGTGGACATACCATCCATAAGTGTTGCCTGGAAGAAATGAGAAAGCATTTACAATATGC ATGTCCTCTATGCTCTAAGTCCATTTATGATATGTCCAAGGTTTGGGAGAAACTTGACCTGGAGATTGCTGCTACACCCATGCCTCCACCATATCGGAAT AAAATGGTCAGTGTTCCTTTTCCCTCATTGATGATTGTGTATTATATGTTCAATGTAGTGATTCAATTTGCGGACAACATTACGTGAAGCGGCCACAATA TTGCGATTGTGGTGACCGCCACAACCGCATCAAATCGTTAGTGCAGTGTGACACCAAATCGCAATGACGCGGCCACAGTCTAATCACATCGGACTGCATT TGGGCCGCATCAGATGACATTCCCTGCTGATTTATGAGGACCGATGGTGTTATTATGTACAGGTTTCGATCCTGTGCAATGATT BLAST |
| Tissue | pods |
| Gene name | LI_gene_158133; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_328148
| Blastp | Probable E3 ubiquitin-protein ligase RZFP34 from Oryza sativa with 60.23% of identity |
|---|---|
| Blastx | Probable E3 ubiquitin-protein ligase RZFP34 from Oryza sativa with 60.23% of identity |
| Eggnog | ring finger and CHY zinc finger(ENOG410XXHF) |
| Kegg | Link to kegg annotations (4324695) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019457803.1) |
| Pfam | CHY zinc finger (PF05495.11) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |