Ll_transcript_510076

• Id Trinity: TRINITY_DN48158_c1_g1_i11
• Name Transcript: Ll_transcript_510076
• Sequence: CAAATATCATTTTATACGAATAGCATTTCCGTAGATTTGTATTGTAATGATTTACATTTGAGTTGTAACAGCATGAAGATATTACTTTCAATATATTGTA ATTTTTGTCCTTAGGGCAAAGAGTGTGGGCAAGATAATAGATCTTGTATTTGTTTTGTCGATGTGGCCGCAATTGTGGTCGCGATGCAGTTTTAGAGACC ACTAAAATCATAACATTGCGGCTTCTGTTGCGGTCACAGAGCCAGAATTACAAACCTTTGTCTCAACTGCTTGTGAAACTACTAGTTTACATTTATGTAT TTGATGATATTTTTAAAAGATGTTCATTAAGATGAGGATGATAAAGAATTACAAAGACCGAGGAGGATCAAAAGAATGGATAAAAAACAAAAATGGAAAA AGAAAAAATTAGTGTAACAAAGCTTCCTCAACATACCAGTTAGTGAAACCCTATAAAAGAACCACAAGCTTTGCATTGAGTAGATTCTTGCCACATGCCT ACATAACCTTATCCCAAATCAAGTGATGAGCTGAAGAAACTTCTTTGAAAACACAACAGTTCCACTGAGTACAGGGTTTGCCAAATTGTAGTATAAATTA CACGTCGGCATAGGATCCACGATGTTTTTCTCATGCAATGTTCCTGTTGAGTATTTGTTATAGGATAGTAAAAGGTGTATAGTAGGCGCGACCGGAAGAT CTTCGAAGTTGACAGTTTTTGGGGTTACCTTTTGAGTCCGTACTACTTTTTTTTATAATTATTCATTCTCTCTCTCTTTAACTTTGTGGTAAAGCTTAGA ATTTGGTTTTTTCTATATTAGTCATGTGAAATCATTTATGGTTGTAGATATCTCACTGTAATATTGCTTTAGTTTAATTTTATTTAAACATCAAACTTAG GAGGTTCTTAATATTCCAAACATGGGTTTTGTCTCTGCTTGTTATGCACTTATGCTCCTAGTAATGATAATTTTTGTGATCCTATTAATCTTTTCACTTG GTTTCCTTGTTTCTTTTTTGGAATGCTGGTTGTGATCTTTGAGATGCTGTAGTTGGGTTTTTTTAAAAGATCTTCCAGAGTGATTTTGTCTTTGCTTGGC CGAAGCCCAATTTCAAATTTTCTGATATCAGGTGGCCTGTCTGTTGTTTGGCAGAGAATTCCTTATTTGTGATGTGTTACTTAAGTTCTTCTGTAAAAAC TTTATAATTGGGAATGGCTTTGTGGCAAGAAGATTGTGCTGACAATCAGACAAAGTTAATATTGTAAAATACCATTTGGAGTATAGGCTTGATTCTGTGG TTGATGAACAGAGATGTGTGATATGACATTTTTCAGTTAAGTTATAGTGTTATACAAATTACAAAGTTCTTCTGCATGAAGATTCGTTTTTTCATGTCCT AATGAAGAAACTTCGTCTTGTCAATCCATTGGCCTTGGTCTCCTTCATGTTGAAGTAGTCAAATCTATTATGTCTCAGTGGTAATTTCTAGTGGAGTATT CGAGTAACTTCTTGTGCTTGGCATTCCTGCTTTTCCTCTGGTTCTTGGTCACTTGTCTGATATGTGTTTGCTTCTGATTTGTTGTGCTTTTGAGGAAAAG GTAAAACATTCTTAAAGGCTGCTATCTTGGTGATGCATTATCAATTTATTTTGTCCCTCGATATGGTACTAAATGCTACTTCCGTTGCGGCTGATTTTTA GTTATAGAGGTAGCAATAACAGGCGTGCCGTCTTATGAACTTCCTTTCAAACAGTAAGTTGCCATTTCTAGTAGTGCCAGAATTTGGAAAGGTTCTATAG CATTGTCCATACTGCAGCATCTGAGAAAGGAATTAGTCTCACATGCATTTGATGGAATCAAGAATTCCGTGCTAATTAGTGTGACCACAGATGAAAGTCT GAGACCCTTGTTGTTCAAAGTGCCAAGTGGTTGCTGATGTTGTGTACATGAACTTTATTAGTATGATGTTCCTTTCAGATTTATTAAGGTGGTTTGTTCG GTCAGTTGATGAATTATAATATATTTGATTTTAGTTGAGCGATCCAATCTCAGATCATATGTGTCAATATAGGATATTTCCTCAGTGTAACCCAAAGCAC AATTAGGCAGACATTTTGTGTTTGTTGGATAGTTCTTCTAATTGATACTCATATCTGCATCATAACAGCCCCATGTGAACTGTGCTGGATTGCTCAGATT GTTCAAATATGAGTCGCGTGTGTCTTGTTTCTTCATGGCAAGGTGCTGAGTCTGACCAGATTGTATGCATACTATGACTTGAAATGTTGAAGGTTGGACA TCACCTTTGTTTTTAGGCATTACTTTAACTATTGGAATAGAGTTGATTGGTTTAACAGGTTCTCTGGTATTTTTACTGGTTTTTCATTGGTCAGTGTACT TCTAGACAAAGTTATCCATCTCCTTCCTGTCATAATGCTATGTGACAGAAAATTGGATTTTAAAACTGGATTAATATGGCAACTCCAGAAGTGAAAGCGA AACTTGGACTATCTTGAAAGTATTACATTTCTGGGTATATTTGTAAATTTAGTTATTCTGAGTATGAAAGTTGTAGTACCCGATCTACTGAAAACAAGGT TGTTCAATGAGTGGTGAGTGATTATGGAAGATGCTGAAGTTCTAGCCTGTGTTATGGAAGTAGTTATACAAAAAGTACTAAATACTGGAACATGGACCTC CAAAAGTGTAAGCATCATAGTGAGTTGCAGGGTTTTCTAACTTAAAAATTTCTAAACCTTAAGGATTGGTCTTTTGGTTGATGATTCCAAAGGGAGATGA ATCGGGTCTTTTTGGTAAGTAGATAGAAAAAGAAAATTGCGTAACTCGAGGTGAACTAAAAAACAGGGGACTGATGGAAGAGAAATAAAAGGGGGTTGCA TAAAAGAACATTAAAACTGAGCATTACCTGCTGTTCGTTGAAGGAGCGCAAACTGCTAAGTGAAAGAGCAAGGACAACAGAGCGCAAGGAGCAAGGAGCA AGGAGTACAAGTGAAAAAGAAAGGCTGAAGCTGATTGATTGTCTGCGGAAGGAAAGGAGCAAGACTAACATAGCACAACTGAGGAAAGGTTGAAAGCCAA CAGAGCACAGCTGAGGAAGGGTTGAAAGCCAACGGAGCACAACTGAGGAAGGGTTGAAAGCCAATGGAGAACAGCCGAGGAAGGGTTGAAAGCCAACAGA GTACAACAAAGCAAGGTTGATGCCCTAAAATTAGTTTTGACGGAGCAAGCTGCACGTAATACTATGTGCCATGCTGATTAGAGCAATGTAAACGTGATCC CTCATCCCAAAAATTGGTTTGCTGATGTTTGATGGGTATAAAAGTACATACTATGGTGCTGGTGCAGCCCCTTGTGCAATTCTGGATTTTAGTGATGTTG GAATATGATAATGGTTGAAAGAGATACAGGCCGTCCACGTGGATTTGGGTTTATTACCTTTGCTGACCGTCGTGGAATGGAAGATGCAATGAAGGAAATG CATGGACGGGAGCTCGGTGATCGTGCCATCTCTGTCAATAGGGCCCAGCCAAAAATGGGGTCTGATGATGCAGACCATGGTTACAGAAGTAGCTACTCAT CTGGTGGTAGGGGAAACTATAGGGTGGGAGACAGTACAGGACAGGATGACTGCTTCAAATGTGGGCGCCCTGGGCACTGGGCCCGAGATTGCCCGATGGC AGGTGGTGGCCGGGGTGGCGGCGGCTCATTTTTGTCACGTCCTAGGTTTGAAGCTGCTGGTGGCCATGGGGATCGCCTAAGTAATGAACGTGACCGCTAT GCTGATGATCGTTATGATGGAAGACGTTATGGAGATGGTGGCCGTTATGATGATCGTTATGGCAGCCATGATCGCCATCCCAGTGACAGGTATCCAACAA ATGGAGATCGTTTTGGAAGTGGTAGAAATGTTGGTTCAGATCGTTACCCACAAAATGGTCATGGCAAAGATAGAGGTTACGATCGGCTAGGTGGTCCACG TGGAGCTGCCGCTGATAGATATGGAGGTGGAATACCAGCAAGAGATGAAGGGAGGAATTATAGGAGCAGCAGGCCTGGTCCATATGACCGCCCCAGTAGG GGTGCTCCCCCATCTTCATTTGATCGTTACTGATTGTTTACTTTTGGTGAATTTTCTTCTATCCAGATGCAGAAGATACACTATGCAACTAGTTTTCTCT ACGTAGGACATGGAAGTTTCATTGAACAACTAGGTTGTAGTTTCATAGATTATGGATTATATCTTTATTCTGAGCTTGAAAACCTCTGTTGAGTTCTTTC CTATTTGGATTAATGGCTAGAATTTATAATCTGCGTAGCTTAAATTCCCCTCCCTCATGCATTACAAAAATTTAAATGGCTTATTAAAAGTAATAATACA TGTTTACAGCTACTAATTTATTGTATACAAGCAAACATTACAATAACTTCCACTCCACTATAAATT
• Tissue: pods
• Gene name: LI_gene_158629;
• Additional information: details;

Expression of Ll_transcript_510076

FPKM

• PAB: 0.1
• PNAB: 0.3
• PS1: 0.2
• PS2: 0.1
• PS3: 0.1
• PW1: 0
• PW2: 0
• PW3: 0.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_510076

• Blastp: Glycine-rich RNA-binding protein RZ1C from Arabidopsis with 49.64% of identity
• Blastx: Glycine-rich RNA-binding protein RZ1B from Arabidopsis with 45.38% of identity
• Eggnog: Rna-binding protein(COG0724)
• Kegg: Link to kegg annotations (AT5G04280)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019449815.1)
• Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;