Id Trinity | TRINITY_DN48158_c1_g1_i16 |
---|---|
Name Transcript | Ll_transcript_510081 |
Sequence | CAAATATCATTTTATACGAATAGCATTTCCGTAGATTTGTATTGTAATGATTTACATTTGAGTTGTAACAGCATGAAGATATTACTTTCAATATATTGTA ATTTTTGTCCTTAGGGCAAAGAGTGTGGGCAAGATAATAGATCTTGTATTTGTTTTGTCGATGTGGCCGCAATTGTGGTCGCGATGCAGTTTTAGAGACC ACTAAAATCATAACATTGCGGCTTCTGTTGCGGTCACAGAGCCAGAATTACAAACCTTTGTCTCAACTGCTTGTGAAACTACTAGTTTACATTTATGTAT TTGATGATATTTTTAAAAGATGTTCATTAAGATGAGGATGATAAAGAATTACAAAGACCGAGGAGGATCAAAAGAATGGATAAAAAACAAAAATGGAAAA AGAAAAAATTAGTGTAACAAAGCTTCCTCAACATACCAGTTAGTGAAACCCTATAAAAGAACCACAAGCTTTGCATTGAGTAGATTCTTGCCACATGCCT ACATAACCTTATCCCAAATCAAGTGATGAGCTGAAGAAACTTCTTTGAAAACACAACAGTTCCACTGAGTACAGGGTTTGCCAAATTGTAGTATAAATTA CACGTCGGCATAGGATCCACGATGTTTTTCTCATGCAATGTTCCTGTTGAGTATTTGTTATAGGATAGTAAAAGGTGTATAGTAGGCGCGACCGGAAGAT CTTCGAAGTTGACAGTTTTTGGGGTTACCTTTTGAGTCCGTACTACTTTTTTTTATAATTATTCATTCTCTCTCTCTTTAACTTTGTGGTAAAGCTTAGA ATTTGGTTTTTTCTATATTAGTCATGTGAAATCATTTATGGTTGTAGATATCTCACTGTAATATTGCTTTAGTTTAATTTTATTTAAACATCAAACTTAG GAGGTTCTTAATATTCCAAACATGGGTTTTGTCTCTGCTTGTTATGCACTTATGCTCCTAGTAATGATAATTTTTGTGATCCTATTAATCTTTTCACTTG GTTTCCTTGTTTCTTTTTTGGAATGCTGGTTGTGATCTTTGAGATGCTGTAGTTGGGTTTTTTTAAAAGATCTTCCAGAGTGATTTTGTCTTTGCTTGGC CGAAGCCCAATTTCAAATTTTCTGATATCAGGTGGCCTGTCTGTTGTTTGGCAGAGAATTCCTTATTTGTGATGTGTTACTTAAGTTCTTCTGTAAAAAC TTTATAATTGGGAATGGCTTTGTGGCAAGAAGATTGTGCTGACAATCAGACAAAGTTAATATTGTAAAATACCATTTGGAGTATAGGCTTGATTCTGTGG TTGATGAACAGAGATGTGTGATATGACATTTTTCAGTTAAGTTATAGTGTTATACAAATTACAAAGTTCTTCTGCATGAAGATTCGTTTTTTCATGTCCT AATGAAGAAACTTCGTCTTGTCAATCCATTGGCCTTGGTCTCCTTCATGTTGAAGTAGTCAAATCTATTATGTCTCAGTGGTAATTTCTAGTGGAGTATT CGAGTAACTTCTTGTGCTTGGCATTCCTGCTTTTCCTCTGGTTCTTGGTCACTTGTCTGATATGTGTTTGCTTCTGATTTGTTGTGCTTTTGAGGAAAAG GTAAAACATTCTTAAAGGCTGCTATCTTGGTGATGCATTATCAATTTATTTTGTCCCTCGATATGGTACTAAATGCTACTTCCGTTGCGGCTGATTTTTA GTTATAGAGGTAGCAATAACAGGCGTGCCGTCTTATGAACTTCCTTTCAAACAGTAAGTTGCCATTTCTAGTAGTGCCAGAATTTGGAAAGGTTCTATAG CATTGTCCATACTGCAGCATCTGAGAAAGGAATTAGTCTCACATGCATTTGATGGAATCAAGAATTCCGTGCTAATTAGTGTGACCACAGATGAAAGTCT GAGACCCTTGTTGTTCAAAGTGCCAAGTGGTTGCTGATGTTGTGTACATGAACTTTATTAGTATGATGTTCCTTTCAGATTTATTAAGGTGGTTTGTTCG GTCAGTTGATGAATTATAATATATTTGATTTTAGTTGAGCGATCCAATCTCAGATCATATGTGTCAATATAGGATATTTCCTCAGTGTAACCCAAAGCAC AATTAGGCAGACATTTTGTGTTTGTTGGATAGTTCTTCTAATTGATACTCATATCTGCATCATAACAGCCCCATGTGAACTGTGCTGGATTGCTCAGATT GTTCAAATATGAGTCGCGTGTGTCTTGTTTCTTCATGGCAAGGTGCTGAGTCTGACCAGATTGTATGCATACTATGACTTGAAATGTTGAAGGTTGGACA TCACCTTTGTTTTTAGGCATTACTTTAACTATTGGAATAGAGTTGATTGGTTTAACAGGTTCTCTGGTATTTTTACTGGTTTTTCATTGGTCAGTGTACT TCTAGACAAAGTTATCCATCTCCTTCCTGTCATAATGCTATGTGACAGAAAATTGGATTTTAAAACTGGATTAATATGGCAACTCCAGAAGTGAAAGCGA AACTTGGACTATCTTGAAAGTATTACATTTCTGGGTATATTTGTAAATTTAGTTATTCTGAGTATGAAAGTTGTAGTACCCGATCTACTGAAAACAAGGT TGTTCAATGAGTGATGAACCAGTATGGAAGATGCTGAAGTTCTAGCCTACATTGTGTTAGTAGTTACATGAAAATAGTAAATAGAACATGGGCTTCGAAA GCATTATAAGCACCATAGTGAGTTTTAGGGTGGTCAAACTTAAAACAAATATTAAAGCTTAAGGGTTGATATTTGACTGTGATGATTCTGAAGATAGAAG AATTGGGTCTGTTCAGTAATTAGATAGAAAAGGGAACTTGAGTGACTAGAGAAGAACTAGAAAACGATGGACTGATTGAAGACCAAATAAAAGGGAGTGT TCCATAAACGGACACTAAAACCAAGCTATACCTGTTCACTAAAATAGCACGGAATACAGAGAGTGAAGGAGCAAGGACAACAGAGCACAAGGAGCAAGGA CTACAGAGTGAAAGAGAAAGGCTGAAACTGGTTGATGATCTGACGAAGGGAAGGAACAAGGCTAACAGAGCATAGCTGAGGAAGGGTTGACAGCCAACAG AGCACAACAAAGCAAGGTTGAACTGCTGAAGCTCTAGAGTTAGTTTTGACAGTGCCAGTTGCATATAATGCTATCTGCTATGCTGATTAAAGCAATTTAA AAGAGATATCTGATACCTAAAGTTGGTTTGCTGGTAACAATGGACATAAAAGTACCCACTGGTGCAGCCCCTTGGATGATGCTGGGTTTTAGTGAGGTTG TAGTATGGAATTTGTCTCCCTGTAGAATAGTGGTCACTATGGCCAGTTACATATCTGACATGTATGGGCTTTGGATTCTTCTGACCTGGCCAAGCTATAT ATGAAAAACATTGTGCAGCTTTAGAATAGTAGCACAGAAAATAATGGTTGAAAGAGATACAGGCCGTCCACGTGGATTTGGGTTTATTACATTTGCTGAC CGTAGGGGAATGGAGGATGCAATGAAGGAAATGCATGGACGGGAGCTCGGTGATCGTGCCATCTCTGTCAATAAGGCCCAGCCAAAAATGGGATCTGATG ATGCTGACCATGGTTACAGAAGTAGCTATTCATCTGGTGGCAGGGGAAGCTATAGGGTGGGAGACAGGACAGGACAGGATGACTGCTTCAAATGTGGGCG TCCCGGGCACTGGGCTCGAGACTGCCCTATGTCAGGTGGTGGCCGGGGTGGTGGCGGCTTATTTTCTTCACGTCCTAGGTTTGGAGCTTCCGGTGGCCTT GGGGATCACCTAAGCAATGAACGTGATCGCTATGCTGATGATCGTTATGATGGAAGACGTTACGGAGATGGGGATCGTTATGATGATCGTTATGGCAGCC ATGACCGCCATACCAGTGACAGGTATCCAACAAATGGTGATCGTTTTGGAAGTGGTAGAAATGGCGGTTCTGATCGTTACCCGCAAAATGGTCAAGGCAA AGATAGAAGCTACGACCGGCTAGGTGGTCCACGTGGAGGTGCTGCCGATAGATATGGCGGTGGAATGCCAGCAAGAGATGAAAGAAGGACCTACAGGAGC AGCAGGCCAGGTCCATATGACCGCCCCAGTCGGGGTGCTCGCCCATCTTCATTTGATCGGTACTGATTTGTTCCCTTTATTGAATTTTATGGGATATCCA GATGCAGAAGGCCCACTATGGACCTAAATTCCTTTTTGGATGATATATGGACCTAGTTTTCTCTACGTAGGGCATGGAAGTTTCATTGAACAAGTAGATA TTAGTTTCATAGATTATGGATTGGTTTGTTTATGTCTTTAATCTGAGCTTGCAAATCTCTGTTGAGTTAATTTCTATTTGGATTGATGGAGAGAATTTAT TAATGTTATTGATGTTCCTCTGGGTAGCTTAAATTACCTCCCTAATATGCAGTGCAAAAAGTTAATTGCTTTTTTAAAAATAATGATGTTAAAG BLAST |
Tissue | pods |
Gene name | LI_gene_158629; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_510081
Blastp | Glycine-rich RNA-binding protein RZ1C from Arabidopsis with 49.82% of identity |
---|---|
Blastx | Glycine-rich RNA-binding protein RZ1C from Arabidopsis with 43.77% of identity |
Eggnog | Rna-binding protein(COG0724) |
Kegg | Link to kegg annotations (AT5G04280) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019461493.1) |
Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |