| Id Trinity | TRINITY_DN48159_c0_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_510102 |
| Sequence | AAAAAACTAAATTTCAAATGCCTCAAATTGTGGCACATCACAATGCCACTCTTTTTCTTTCTCTTTTTTAATCTTCTCACAATTTCTCTCTCACACACTT TTCTTACAGAAAAAGCTTGCTATTCCATTTCCCTGTGACGTTACTTTGTCTCATTCAAACTCAGCAACTACTCACCCACCTAAATCCAACCCCTTATCCT TCTCATTTAACTCACACACTCAACTCAACTCTTCTTATTTGAATTCAACCCTTTCTACATTCAACAATGTAACATAACACCATTCAAAAAATGCAACTTT AGTTTGCCACTTGTGTAGATCTGAAACACCCGGGATCTAAAAAAGAACAGATTTTGAGTTCTGGGTTTTGTTCTTTTCAGTATTGGGTATTCGAAAAAGC CTTTTTTTCCTGAAAATTTTGGAGACATTGTTTTTCTAAAAAATGGGGTCCAGTGGCAGCAAAGCCACTTCATCTTGTAGTTCATCGTCGTGTTCCGGAA CTTTTCAGAGGGGTCGATCTAAAAGGTATAGAGGGTTTCAATCTTATTGTCTAGGAACAACATCTGGATCTCATGATAGTGATAATGACGAGGTTTGTGA GCAGAATAAAGTAAATGGAAATGATGTTACATACACCAAAGGCAAGGAAAGAGACTCAGATGAAGTGAAAATAGATTCTTTTAGAAAGGTTAAATCTGAT GAAATGTCTTGCATTCCTCCTAAACTCGACTTTGATGAGTGGGGTGACACTGCATCCAGAATCGGCAGCAGCTCTGCCCATGCTTCTTCAACTCAGTCCT TGAACCCTTCAAGTCGATTCTTTTCTCGCTTTAGCCTCATTCCTGGTAATATAAGCTTCAGACTTAGCAGAACTACCAGTTTGAGGTCATCGAGGCCTTG TCCTGTTTCTTCTACAAGCCCTTCAATATTTAACAATGAAGGTGAGCAGAATCTGCATCCACGGCATCCAGCTAGCTTGATTAATAGAAACGAACCTCGA CAAGGTAGTGACCCACTTAATGCATCATTTGTTAATCAAGATCCTATACAGTATCATGAAGATGCTTCTAATAATTTAAGATCTATCGCCTCAGCAGTGG GTTCGCCTTGCAACTTACAGAGAAGTCCAGCAATTTATCCTATCCAGGATGTGGTTACAGATGGAGATGGTACAAGAGAAGTGCTGGATTTGGACTTGTT TGCTCCAAGAATTCATAATGAGTCTGAAAATGTTGAGACTAGACATACTAATAGACGAAATGGAGTTCGAGAACATGTTGAACGTAATGTTAGTTTCAGC AGAACTTTAAGTGTTGGAAGGCTTCGTGACAGAGTTCTCCGCCGATCAACATTATCTGATTTCACCTTTTGCCCTTTGCAACAAGAGAGAGAAGTGAGAG ATGCTCGTCAGGATAATGGAAGACAAGCGGGGGAGAGAGATACAAGAGTTTCACCATCTGGAGATCTTCCATCCACTATGTCTAGATCCTTGTTTACCTT CCAAGACTATGAGGTTGAGACTTCACGATCAAGAGGAACTAGGTATCAGGATCTACTGGAACATAGGTCCAATTTCCTTGAACGGCGAAGAAGAATACGG TCCCAGGTTCGTGCTCTTCAGAGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGAAAGATCATGTATCTTGTCCGGTCAACATAGAAATGGTCATT GTACATGCCGAATCAGCAGTCACGAACGAAGTACCAATTCAAATGATGATACTAATGCCAGTGCTAGTATATCAAGAATTGTTATGTTAGCTGAAGCCTT ATTTGAGCAATCTGTAGTTTTATCTTCTCGTCCGTCCGTGTCTTCTATTGGATCTGTTCCAGCGCCCAATGAAGCTGTGGAATCCTTGCCTGTTAAATTA TACACAAAGTTGAACAAACATCAAGAAGATGATGCACAATGTTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGAGAATACTGCCTTGCCGCC ATGAGTTTCACAGAACATGTATAGACAAGTGGCTCACAGAGGTTCACAGGGTATGCCCACTATGTCGCGGTGACATCTGTGTATCTGATTCATTGTCATC GGAGAACTAAAGTGACAATTTGTTGATCAGCATCTTCTCTAAAACACCCAGAGCTCTTTGAAATAGTGAAGTATTTTCACATACAGTGATGTGACTGTTA GAAGAAGTTCAGACATTTTCTGCTAGCATTCATCATTGTTGTCAATGATCATTTACTCCAATTTCTGAATAAACATGAAACCATTGTAGAAATAGACTGA ACTAGTAGCTCCCTTTGCCTGCATCACCAAGTGAAAGAGAGGGGCTATTGTAAAAGGTGCTAGTGGTGTATCCAACATCCTTTTTCTTTTGCCACATTTT TGTTGTTATGCTAACACAAAAGTATCAGTTAAATATGTGCTTTTCATCTTTGGTGATATTGCAGCATCTTTGACTGAAGCAACATAGCATTCTCTTTGTC TTTTAGACCAGTCAAGCAAGTGCATGAAAACAATAAACATTTGTGCATGCGTGTGATTTCCTTTTCACTTTTCAGAGAAAAAAGGGTAAGAAACATATTA CAGTGTAGGAATATATTAAAGGGTATTGTTAACTAGTCCCCTATGGAACTTGTTAAGAAAAATAATATTATAAAACTAAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_158635; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_510102
| Blastp | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 from Oryza sativa with 40.58% of identity |
|---|---|
| Blastx | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 from Oryza sativa with 40.58% of identity |
| Eggnog | Ring finger protein(ENOG410Z5DF) |
| Kegg | Link to kegg annotations (4344437) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019423632.1) |
| Pfam | RING-H2 zinc finger domain (PF12678.6) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |