Ll_transcript_510104

• Id Trinity: TRINITY_DN48159_c0_g1_i7
• Name Transcript: Ll_transcript_510104
• Sequence: CATAAATTCAGTTAAAATATTGGAAAAAGTTTTTCTATTTATTGAATAAGATTACATACCTCTATTTCTAGTTTCCCTGTGAAGTTGGCTTGTCTCATTC AAACGCAGCATCATAACACTCAACCCTCCTCATTTTCCCTCACACACTCAACCCTCCTCCTCTTATTTGAAATCGACCCTCTTCTTCACATATAATGCAA CATAACACCATTCAAAAAATGCAACTTTAGTTTGCCACCTCTGTAGATCTGAAACACCTGGGATCTCAAAAAGAACAAATTTTGAGTTCTGGGTTTCATT CTTTGGTGCATTGGGTATTCGAAAAATCATTTTTTTCTTCTGGAAATTTGTGGAGACATTGTCCGGCTCAAAAATGGGGTCCAGTGGCAGCAAAGGCACT TCATCTCGTAGTTCATCGTCGTGTTCTAGTAGTTTCCGAAAGGGTCGATCTAAAAGCCACAGAGGCTTTCAATCTCATTGTTTAGGAACAGCATCTGGAT CTCATGATTGTGATAATGACGAGCATGAGGTTGCTACAAGGATCACATTGTTAGGATTCAGAAGTTACTTCCTTTATGCCTCTGTTCACTGTTAGATAAG TTGTATTTTTAGAAAGGATATAATTTTCAAGATTTTCATGCAGTTTATCTGTTCCTTTTCCCCATTGCCGGATCAGGTTATAATTTGAGTTTTTTGCTGC AATATGCTAATGAGCTTATTTTCTTAAGCCTATTGAAATAAGCTATAAATAGCTTATATGAATGTCATAACCCAAGCTTATTTTCATAGGTCAATTTGAC AACGTATTAATAGTTAATACTGCTAAAATGAGCTTGTTTTCATCTTGTATTAATGACGGTTTTGGTTGAGTGATCAAAGTTTATGGCACTAATTGTCATT TGTAATTCATGCTTTAGGTTTTGGAGCAGAATAAAGTAAATAGAAGTGATGTTACATACACCAGTGACAACGAAATAGGCTCGGATGAAGTGAAGATAGA TTCTTTTAGAAAAGTTAAATCTGATGAAATGCCTTGCATGCCCTTGAACCTCAACCTTGATGAGTGGGATCACATTGCATCCAGAACCGGCAGCGGCTCT GCCCATGCTTCTTCATCTCACTCCTTGAACCCTTCAAGTCGATTCTTTTCTCGCTTAAGTCTTATTCCTGGTAATATAAGCTTCAGACTTAGCAGAACTA CCAGTTTGAGGTCATCGAGGCCTTGTCCTGTTTCTTCTGCAAGCCCCTCAATATTTGATAATGAAAATGAGCTTAATCTGCGCCCATGGTGTCCTGCCAA CTTGGTTAATGGAAATGAACCTCAACAGGGTAGTGACTCGCTTAATGCATCTTTTGTTAATCGAGTTCCTGTACAATATCACGAAGATGCTTCTAATAAT TTAAGATCTATCACCCCAGCACTGGGTTCGCCTCAAAACTTGCAGAGAAGTCCCGCAATTTATCCTGTCCAGGATGTGGTGATAGATGGAGATGGTACAA GAGAAGTGCTGGATTTAAACTTGTTTACTCCACAAATTCATACTGAGTCTGAAAATATTGAGACTAGACATACTGATAGACGAAATGGAGTTCGAGAACA TGTTGAACGTAATGTTCATTTTACAAGGACTTTAAGTGTTGGAAGGCTTCGTCATAGAGTTCTCCGTCGATCAACATTATCTGATTTCACCTTTTGCCCT CTGCAACAAGAAGGAGAATTAAGTGATGCCCGTCATAATAATGGAAGACAAGTAGGGGAGAGAGATACAATAGTGTCACCATCTGATCCTAATGCTGTAC GTTCTCCTTCCACATCTGGATATCCTCCATCTACTACATCTAGCTCCTCGTTTACCTTTCAAGAGTATGAGGTCGAGACTTCACGATCAAGAGAAACTAG GTATCAGGATATACTGGAACATCGATCCAATTTCCTTGAACGGAGAAGAAGAATGCGGTCACGGGTTCGTGCTCTTCAGAGGTTGGGTAGCCGGTTTGAA AATCTTTCTGGACATGAAAGATCATGCATCTTGTCTGGTCAACTTAGAAATGGTCGTTGTACATGCCGAATCAACAGTCATGAACATAGTACCAATTCAA ATGATGATACCAATGCTACAGCTAGTATATCAAGAATTGTTATGTTAGCTGAAGCTTTGTTTGAGGTTGTGGATGAAATTCACCAGCAACCTGTGGTTTT ATCTTCCCGCCCATCTGTGTCTTCTATTGGATCTGTTCCGGCGCCTAATGAAGTTGTGGAATCCTTGCCTGTTAAATTATACACAAAGTTGAACAAATAT CAAGAAGATGCTGTACAATGTTATATATGCCTTGCCGAGTATGAGGATGGAGACAGCATGCGAGTACTGCCTTGCCGTCACGAATTTCATAGAACATGTA TAGACAAGTGGCTGAAGGAGATTCACAGGGTATGCCCACTATGTCGCGGTGACATCTGTGTATCTGATTCATTGTTGAGGGAGAACTGAAGTGAGAATTT GTTGATCAGAGTTCTTGGGAGGAGTAGTAAAGTATCTCCACATACACTGGTGTGTGATTATTAGAAGTTCATTTATTTTCTGCTAGCATTCATCATTGCT GTTAATGATTATTCACTCCAGTTACTGAATAAACATTGTAGAAATAGACTGAACTAGTAGCTCCCTCTGCTTCCATAACCAAACCAAGTGAAAGGGAGGG ACTATTGTTTAATGAGGAAATGTGTGAACATGTTTCAGAAAAGGTGCTCATGGTATACCCAACATTCTTTTGTTTTCTCCCACAAAAGTAATAGTTAAAT GATGGCTTTGCATCTTTTGTGACATTGCAGCATCTTTGACTGAAATAACATAACATTCTCATTGTCTGTAGGCCAGTGAAGCAAGTGTAACATTTGTGCA CGCATGTGAATGTGTCATATCCTTTTCACTTTTCAAAGGGAAAAGGGGAGAAAAGAAACATATTAACAGTGTAGGAATAGATGAAAAGTTGACAAGTTTA TTGATTAGAAAAAAGTAGTAATAGTAGTAATTTCTGAGTGACTCCTATCCCACCTGAAAGAACAACTAGACTACAATGATTTATGCAACTAGGTTTGTTT TCTTTAAATTTGGAGCAAAAGAGTGGCACTGGATCCCCAAAATTTGTTTTCTTTAAATTCTTCGGCGGACTTCTATTCCATATGTTCCTATCCTGAAATT CAATGCTTCTTATTAAAAAA
• Tissue: pods
• Gene name: LI_gene_158635;
• Additional information: details;

Expression of Ll_transcript_510104

FPKM

• PAB: 0.2
• PNAB: 0.5
• PS1: 0.1
• PS2: 0.2
• PS3: 0
• PW1: 0
• PW2: 0
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_510104

• Blastp: Receptor homology region, transmembrane domain- and RING domain-containing protein 2 from Oryza sativa with 40.58% of identity
• Blastx: Receptor homology region, transmembrane domain- and RING domain-containing protein 2 from Oryza sativa with 40.58% of identity
• Eggnog: Ring finger protein(ENOG410Z5DF)
• Kegg: Link to kegg annotations (4344437)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019422012.1)
• Pfam: Ring finger domain (PF13639.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;