Ll_transcript_510457

• Id Trinity: TRINITY_DN48161_c0_g2_i3
• Name Transcript: Ll_transcript_510457
• Sequence: ATGAAATATTCTTTCACATGAAAGACACGATCCTCTCCTTCATTGTTTATTCTCTTCCGTTGTTCCCGTCTCTCTTCTCCGCGTCCTTTCTCTCTCCTCT TCTTTCTTTCCCCTCTCCATCATTTCATTACCGATTCTCTTCAATTATTCCTTCCTTCATTTTCTTTCAACGAGTTGATTTTGGGGGTGTTCTTTATATG CTAAATTAATCTCTGAAGGTTGAAAGATGCAAGCTTTTATTTGATGGTAATAAGGATTAATTTGCATCAACAAATCTCTACAATATGGATCAGATGACGG ATACGGAAATGGATCAACAGAATCAAGAATATTTACGTTCTGAACCCTGTATCGTTTTGAGAGGCTCCACAAGTACCTCACAGCCAAATATCCGCCCAAT GGTGGCAGCTTCAGGGAACACAACTAATGTTGATTCTTACTATTTACAGGATGCTTATGACAATTACAGGTTGTACGGGTTGGCACAATACAATGCCGTT CAGCATCAACATAATCTTGACATGGCTGGTGCAACCGCAGCCAACATATATTATTCTGGCATGAATCCTTCTTCTAGTAGTGGTGTATTTACCCCTTTGC CTCTAAATCACCGAGGCTCTGATCAGTTGCCAGGTTCAAACACATTTGCAGTATCTGGAAGTTCTTCAGATAATTTTGGAAGAAGCAGCGGTTTCATGGA CGATGTCAGAGGTCCGTACAAAAGGAAAATTGCTGAAGGGGTCAGAGGAAATCACCAGTATGTTAATGCTTCAGCTAGTTCTTCCATTGCTCCCCCGAAT GCAAGACACGCTGATGGGGTCGCTATGATGGATACTGCATCATATTCCTTGCACATGCCTTCACTTGTGGAAGTAGGACCACATGGTAGTGCATGGAACA GATCAGGTGAGTCTATTATGGTGCATGACCGCAACAGTGTGATTCGTGGAAGCTATTTAGGTCAGCTCTTTCAGGCAGCTCCTCCTCCCTGGTTTGACCA GCAGCTGAACAATGATGGCCATACTACAGCCTGGAATCAGCCTCTTCCGATGCCTTATATGCAAGCACCGAATGTTAATGGAAGTTCATTAGAGAATGCA AGTATGGGTCTGCAGAGATATCCCGTCACAGCCAGCAACAGAAATGGCCTAAGGTTTCGTCACCCCCCTCCTGTGAACCACCCACATCATAATTATCATC ATCCAGCGCTACCTATGCAAGGAGTGAGAGGTCACAATATCATCTTTCATCCTCCTCCTGTAACTGCAGCTTCATTTAGAGTTCCTACAAATCCTTCACG CAATGCCGCAATCCCCACACAGGCTGGTTATGAGATGGTTCCTAGGCATTTTGGCCCTGTGCCGCCAGAAGGCCTTCAGATATACCGACCTCACAGAGCA ATCATGCCCGATGCAACTCTCAGACATAGAAATCTTGCCCCCATGGGATTTCTTCAAGTGGATGATGTTGCTTTAATTGATGAAGTGAGAAATCCGGTTG ATCATCACAGAGATATGCGTTTGGACATCGAGGATATGTCTTATGAGGATCTTCTTGCATTGGGTGATCGGATCGGCAAAGTAAGCACTGGCTTATCAGA AGAAACAATCACAGCTCAATTGAAGATGAAGACTTATGTAACTTATGCCGCTGCTATTAATTTGGAGGAGCCAGCTTCTGAAGACCAGGAATCTGATTCT TGTATAATATGTCAGGACGAATATAAAGACGACGAGAATATTGGAGTTCTTCGATGTGATCATGAATTTCATGCAGATTGCTTAAAGAAATGGTTGCTTG TCAAAAATGTCTGCCCTATATGCAAATCAGAAGCCTTGAATCCTGAAAGGAAGGATTTATAGAAATAAATAAAGTCTAAATCATTCTACCCTTCTTTGGT TAATTTATTTTTGAACAGAATTCATATTTTGTTATGTAATTTTGTATATGTACTTGCAAATGTATAGACAGTCACAATGCCCAACTTATTTATTGTTGGG ATTAGAACTTTGTATGTATGAATTTGTACAGACTTTGTTCTGTTTGATGTATTAACTTCAGGTAATTATATCATTGTTGTTTATGATTTATTAAAAAAAA AAAAC
• Tissue: pods
• Gene name: LI_gene_158643;
• Additional information: details;

Expression of Ll_transcript_510457

FPKM

• PAB: 16.6
• PNAB: 6.9
• PS1: 15.9
• PS2: 10.2
• PS3: 13
• PW1: 14.5
• PW2: 10
• PW3: 5.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_510457

• Blastp: Probable E3 ubiquitin-protein ligase ZFP1 from Oryza sativa with 32.72% of identity
• Blastx: Probable E3 ubiquitin-protein ligase ZFP1 from Oryza sativa with 42.2% of identity
• Eggnog: zinc ion binding(ENOG41121N2)
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019456828.1)
• Pfam: RING-H2 zinc finger domain (PF12678.6)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;