Id Trinity | TRINITY_DN48161_c0_g3_i6 |
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Name Transcript | Ll_transcript_510462 |
Sequence | ATTTTTGTTGCCCATGAAAGACACGATCCTCTCCTCCTTGTGCATTTTCTCCTCCTTTGTTTCTCTCTCTTCCCTGTGTTCTTTCTCTCTCCTCTTCCCT GTCCACCCTTCCGTTACCGATTGTGATCAATTTCTGCATCCTTCAGTTTCTTTCAACGGAATGAACTTGCATTCTTGGGTCGTCACCACATTCACCGGAT TATAATTTATGAGTTTTTTCTTTTAACCCCAGTAATAAATTTGACTTGTTAATGTAGAAAAGGTTAAAATTTTATTTTGTTGTGAATTTTCAACAGAGTT GATTTTGGGGGTGTTCCTGGTATGTTATATTAGTCTCTGAAATTTGGAAGCTGCAAGCTTTTGTTTTGATGATAATAAGGTACTATTTGTTATCTGTTCT TTTAGTTTGTTTGGTGGATCATGATGAACTAGGGATGTTATAGATTAAGTACTTTCTTGTTTTGTTTGGACCCTGAAAAGTAGCTAGAAAGAAGAAAAAA AGTTTTTTTGAAGCAATTTTCGGCCCGTCGATTTTTTAGTTTTTTATGCACACATATGTTCAATGATTCCTACAATTCAATTCATAGGGCTCTAAAATTC ATTAATTTAGACTTACATATTTTCATGATTATATGGTCACTTCTAGTATGTCGCGTGTTCGATCCACGCTCACCGCACTTCTAATATGTCGCGTGTTGTT GTTTTATTTTTATTTTTTGTCTTTAATGTTTGTTTTTGAATGCAACCATATTTGGCTCAACTTTGCTTTCTCTTGAAATATAAATCTGCATCTTTCATGT CCATTTAATGTATCATAAGTAATTTGTCCAAGGGTCTGGTTAGTTACTGCCTAATGTTGATAAGGAATGTATGCCACTTAGCACTGATACTTAAATGGTT GTCGTGAATTCTTCGATGCTTTTAAGATGCTTGTCGTTTATATGTATTTCAACTAATTTATGAATTTTTTCCATATTAACTTATTTGTATTGTGCCGTAT CCACGTCAGTGCTTCTTTGGCTATACACCCTTATTTTCTTGTGCTGAATGTTTGCTTTGTTGTTTTTATCTAATTGTTATTATCTCCTTATGAGTCTGAT TTATGCATTCATCTTGCCTGGAATATTAGGATTAATTTACGTCAACAAATCTCTACACTATGGATCAGATAACGGATTCTGAAATGGATCAACGGAGGCA AGGATATTTCCATTCTGAGCCCGGTGTTGTTTCGAGAGGATCCGCGAGTATCTCACAGCCGAATATCCGCACAATGGTGGCAGCTTCAGGGACCACAACC AATGTCAATTCCTACTATTTACAAGATTCTCATGACAATACTGGGGTGTATGGCTTGGCACAATACAATGGCATTCAGCCTCAACATAATTTTGACATGG GTGGTGCTGCTGCAGCCAACATATATTATTCCGGCATGAATCCTTCTTCTAGTACTGGCGTATTTACCACTTTACCTCTAAACCACCAAGCCTCTGATCA ATTGCCTGGTTCGAACACATTTGCGATCTCTGGAGGTTCTTCAGATAGTTTTGGAAGAAACAGCAGCTTTGTGGATGATGTCAGAGGTGCATACAAAATG AAAATTGCTGAAGGGGTAAGAGGAAATCATCAGTATTTTAATGCTTCAGCTAGTTCTTCCGTTGTGCCCCCTAATGCAAGACATGCCGATGGGATTGCTA TGGACACTGCATCATTTTCCTTGCACAGGCCTTCACTTGTGGAAGTAGGACAGCATGGTGGTGGATGGAACAGGTCAGGTGAGTCTATTATGATGCATGA CCAAAACCATTTGATTCGAGGAAACTACTTAGGTCAGCACTTTCCGCCAGCTCCTCGTCCATGGTTTGACCAGCAGTTAAACAATGATGGCCATACTACA GCCTGGAATCAGCCTCTTCCAATGCCTTATATGCAAGCACCAAATGTTAATGGAAGTTCATTAGAGAATGCAAGTATGGGTTTGCAGAGATATCATGATA CAGCCAACAACAGAAATGGTCTCAGGTTTCCTCATCCCCCTCCTGCCAACCACCCACACCATAATTATCTTCATCCGCCACTACCTATGCAAGGAGTGAG AGGTCATGCTATCAACTTTCACCCTCCGGCAACTGCAGCTTCATTTAGAGTTCCTACAAATCCTTCACGAGGTGCTGTGATCCCCCCACAGACTGGTTTT GAGATGATACCTAGGCATGTTGGTCCTGTACCGTCAGCAGGCCTAAGGATATACCGACCTCACAGATCAATCATGCCCGATACAACTCTCGGACATAGAA ATCTTCCCCCCATGGGCTTTCTCCGAGTTGATGATGGTGCTTTAATTGACGAAGTGGGAAATTTGGTTGACCATCACAGAGATATGCGCTTGGACATAGA GGATATGTCTTATGAGGATCTTCTTGCTTTGGGTGAGCGGATTGGCAAAGTAAGCACTGGTTTGTCAGAGGAAACAATTTCAGCTCAATTGAAGACGAAG ACTTATTTAACACATGCTACCGCTATTAATTTGGAAGAGGAAGTTTCTGATGATCAGGAATCTGATTCTTGTATGATATGTCAGGATGAATATAAGGATG AAGAGAAGATTGGAGTTCTTCGATGTGAGCATGAGTATCACGCAGATTGCTTAACGAAATGGTTGCTCGTAAAAAATGTCTGTCCTATATGCAAATCAGA AGCCTTGACCCCTGAAATGAAGGACATAGAGAAATGAATGTAGCCTATATCTCTTTCTCATCCTCCCTATGCCAATCTTGGCTAATTTATTTTTGAACAG AATTCACATTTTGTTGTGTCTTTTTTGTAAATCTACTTGCACATATATAGACAGTTACAGTGTCCAACTCATTTACTGTTGGCATCAGAACTTTTGTATG TATGAATTTGTACAGACTTTGTTTTGTTTGGTGTATTAACTTCAGGTAATTACACTATTACTGTTTATGATTTATTATTTTGATTGATATTTATGGTTGG AACTTTGAAGTGTCATGATTAAAAAA BLAST |
Tissue | pods |
Gene name | LI_gene_158644; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_510462
Blastp | Probable E3 ubiquitin-protein ligase ZFP1 from Oryza sativa with 29.39% of identity |
---|---|
Blastx | Probable E3 ubiquitin-protein ligase ZFP1 from Oryza sativa with 38.76% of identity |
Eggnog | zinc ion binding(ENOG41121N2) |
Kegg | - |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019425908.1) |
Pfam | RING-H2 zinc finger domain (PF12678.6) |
Rfam | tRNA (RF00005) |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |