| Id Trinity | TRINITY_DN48161_c0_g3_i8 |
|---|---|
| Name Transcript | Ll_transcript_510465 |
| Sequence | ATTTTTGTTGCCCATGAAAGACACGATCCTCTCCTCCTTGTGCATTTTCTCCTCCTTTGTTTCTCTCTCTTCCCTGTGTTCTTTCTCTCTCCTCTTCCCT GTCCACCCTTCCGTTACCGATTGTGATCAATTTCTGCATCCTTCAGTTTCTTTCAACGGTAATTGGGGGTTTCTCCATCAAAGTTTAAACTTTTTTGCTG CAAACTCTGTTTTTTGTGGCAATCTAGGGTTAAATTATCTCCATTTTCCTTTTTTCCGATGAAAGGAATGAACTTGCATTCTTGGGTCGTCACCACATTC ACCGGATTATAATTTATGAGTTTTTTCTTTTAACCCCAGTAATAAATTTGACTTGTTAATGTAGAAAAGGTTAAAATTTTATTTTGTTGTGAATTTTCAA CAGAGTTGATTTTGGGGGTGTTCCTGGTATGTTATATTAGTCTCTGAAATTTGGAAGCTGCAAGCTTTTGTTTTGATGATAATAAGGTACTATTTGTTAT CTGTTCTTTTAGTTTGTTTGGTGGATCATGATGAACTAGGGATGTTATAGATTAAGTACTTTCTTGTTTTGTTTGGACCCTGAAAAGTAGCTAGAAAGAA GAAAAAAAGTTTTTTTGAAGCAATTTTCGGCCCGTCGATTTTTTAGTTTTTTATGCACACATATGTTCAATGATTCCTACAATTCAATTCATAGGGCTCT AAAATTCATTAATTTAGACTTACATATTTTCATGATTATATGGTCACTTCTAGTATGTCGCGTGTTCGATCCACGCTCACCGCACTTCTAATATGTCGCG TGTTGTTGTTTTATTTTTATTTTTTGTCTTTAATGTTTGTTTTTGAATGCAACCATATTTGGCTCAACTTTGCTTTCTCTTGAAATATAAATCTGCATCT TTCATGTCCATTTAATGTATCATAAGTAATTTGTCCAAGGGTCTGGTTAGTTACTGCCTAATGTTGATAAGGAATGTATGCCACTTAGCACTGATACTTA AATGGTTGTCGTGAATTCTTCGATGCTTTTAAGATGCTTGTCGTTTATATGTATTTCAACTAATTTATGAATTTTTTCCATATTAACTTATTTGTATTGT GCCGTATCCACGTCAGTGCTTCTTTGGCTATACACCCTTATTTTCTTGTGCTGAATGTTTGCTTTGTTGTTTTTATCTAATTGTTATTATCTCCTTATGA GTCTGATTTATGCATTCATCTTGCCTGGAATATTAGGATTAATTTACGTCAACAAATCTCTACACTATGGATCAGATAACGGATTCTGAAATGGATCAAC GGAGGCAAGGATATTTCCATTCTGAGCCCGGTGTTGTTTCGAGAGGATCCGCGAGTATCTCACAGCCGAATATCCGCACAATGGTGGCAGCTTCAGGGAC CACAACCAATGTCAATTCCTACTATTTACAAGATTCTCATGACAATACTGGGGTGTATGGCTTGGCACAATACAATGGCATTCAGCCTCAACATAATTTT GACATGGGTGGTGCTGCTGCAGCCAACATATATTATTCCGGCATGAATCCTTCTTCTAGTACTGGCGTATTTACCACTTTACCTCTAAACCACCAAGCCT CTGATCAATTGCCTGGTTCGAACACATTTGCGATCTCTGGAGGTTCTTCAGATAGTTTTGGAAGAAACAGCAGCTTTGTGGATGATGTCAGAGGTGCATA CAAAATGAAAATTGCTGAAGGGGTAAGAGGAAATCATCAGTATTTTAATGCTTCAGCTAGTTCTTCCGTTGTGCCCCCTAATGCAAGACATGCCGATGGG ATTGCTATGGACACTGCATCATTTTCCTTGCACAGGCCTTCACTTGTGGAAGTAGGACAGCATGGTGGTGGATGGAACAGGTCAGGTGAGTCTATTATGA TGCATGACCAAAACCATTTGATTCGAGGAAACTACTTAGGTCAGCACTTTCCGCCAGCTCCTCGTCCATGGTTTGACCAGCAGTTAAACAATGATGGCCA TACTACAGCCTGGAATCAGCCTCTTCCAATGCCTTATATGCAAGCACCAAATGTTAATGGAAGTTCATTAGAGAATGCAAGTATGGGTTTGCAGAGATAT CATGATACAGCCAACAACAGAAATGGTCTCAGGTTTCCTCATCCCCCTCCTGCCAACCACCCACACCATAATTATCTTCATCCGCCACTACCTATGCAAG GAGTGAGAGGTCATGCTATCAACTTTCACCCTCCGGCAACTGCAGCTTCATTTAGAGTTCCTACAAATCCTTCACGAGGTGCTGTGATCCCCCCACAGAC TGGTTTTGAGATGATACCTAGGCATGTTGGTCCTGTACCGTCAGCAGGCCTAAGGATATACCGACCTCACAGATCAATCATGCCCGATACAACTCTCGGA CATAGAAATCTTCCCCCCATGGGCTTTCTCCGAGTTGATGATGGTGCTTTAATTGACGAAGTGGGAAATTTGGTTGACCATCACAGAGATATGCGCTTGG ACATAGAGGATATGTCTTATGAGGATCTTCTTGCTTTGGGTGAGCGGATTGGCAAAGTAAGCACTGGTTTGTCAGAGGAAACAATTTCAGCTCAATTGAA GACGAAGACTTATTTAACACATGCTACCGCTATTAATTTGGAAGAGGAAGTTTCTGATGATCAGGAATCTGATTCTTGTATGATATGTCAGGATGAATAT AAGGATGAAGAGAAGATTGGAGTTCTTCGATGTGAGCATGAGTATCACGCAGATTGCTTAACGAAATGGTTGCTCGTAAAAAATGTCTGTCCTATATGCA AATCAGAAGCCTTGACCCCTGAAATGAAGGACATAGAGAAATGAATGTAGCCTATATCTCTTTCTCATCCTCCCTATGCCAATCTTGGCTAATTTATTTT TGAACAGAATTCACATTTTGTTGTGTCTTTTTTGTAAATCTACTTGCACATATATAGACAGTTACAGTGTCCAACTCATTTACTGTTGGCATCAGAACTT TTGTATGTATGAATTTGTACAGACTTTGTTTTGTTTGGTGTATTAACTTCAGGTAATTACACTATTACTGTTTATGATTTATTATTTTGATTGATATTTA TGGTTGGAACTTTGAAGTGTCATGATTAAAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_158644; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_510465
| Blastp | Probable E3 ubiquitin-protein ligase ZFP1 from Oryza sativa with 29.39% of identity |
|---|---|
| Blastx | Probable E3 ubiquitin-protein ligase ZFP1 from Oryza sativa with 38.76% of identity |
| Eggnog | zinc ion binding(ENOG41121N2) |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019425908.1) |
| Pfam | RING-H2 zinc finger domain (PF12678.6) |
| Rfam | tRNA (RF00005) |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |