| Id Trinity | TRINITY_DN48171_c1_g2_i14 |
|---|---|
| Name Transcript | Ll_transcript_508541 |
| Sequence | AGCTGAGCGCTAAAAGAAGGACACAATAGTCTCTTAATAGTTAATAGTGATATGAAACTATTGTTGTGAATTGTGATAAGTATAAACTTATAATAAATGA ATTGATTTATGAGTTGGCAAATGAAAGAAGAGACATGCAAAATACGACAGAACAACATAAGATCTTGTTTCAGTAACCACTCAGAAAATATCATTTGGCA CCGTTGGTTGTGTCTTTTACTCACATCCACAATGAAAGCCTATCTCACACTTCCAAACTCAACTAAGTTATGGATTTCTCTTTGAAACTCAACTCCAAAA CACTTTTTCCTCTCACAACTCCTTCTTTCAACCTTAACCCTTTTCTTCTCACATCATTTCCTCATCATCATCAATTAACTCTTGCACTTTCTCATTCATC TTCACAATGTAAGGCAGGTTGGGGTGCTTGTTGCATCAATGCAAGTGCAGGGAGGAGACAGCAGAAGAAGGGGCCAAGTGCAAGGCCCAAAGGCCCTGCT TCTAAGGGTTTTGTCTCGAAATCTTCTATTGGAACAAGCAACCAGCAAAAAGATAAGAAGAATGCTAGAGTGAAAGGGGATCCATTGACTCCATTAGTCA GTGAGATTTCGGGGGATGATAATAAACAAACACTTGAAGTGAATACTGATGCTGATGATGAAGGAGGAGGAGGAGGAGGAGAAGGGGCGGTTGAACCTTC CCATCTAGAAAACTTTGAAGTTGTAGATAGAACTGATGAAGTTGCTGGGGAGTTGGGTGGATTTTCGTTATCGGATGAGTCATTAGCTGTTGTTGCTAAG AGCAATCAAGGTGGGGAAAATGAAAACGTGTCTGTAATTGATGAGGATGTTCTCATATTACAGCAGGAGCAAATTCCTTACATTGGGGATTTTGGGAATG TTAAGAAGTCAGATGATAGGACATTAGGCTACGTAGAAATTAGTGAACACGTTCAAGAAACAAAGACTGTTTCTGATGATGAAATAGCTGAGGAATCCAT CACAGAAACAAGTACTGGCGCTGATGATAAAATAAACGAGGAAGCTTCTCGGCTGTTGGAGTTGGAAGCAATTTCGCGCAAGCAGGAAATAGAGAGGATT GCATATGAGAACCTTTCACAAGAAACCAAGCTGTTTGTATATCCTCCTGTGGTTAAACCTGATCAAGACATAGAAGTTTTCCTTAACAAGAGTCTTTCAA CACTAGCTAATGAGTCAGACATTCTGATCATGGGAGCATTTAACGATTGGAGGTGGAAATCTTTTACCTTTCGGTTAAATAAAGCGAATCTCAAGGGTGA TTGGTGGTCTTGCCAAGTACATGTGCCAAGAGAAGCTTATAAAGTAGATTTTGTGTTCTTCAACGGCCAAGATGTCTATGACAATAATGACCGAAAAGAC TTCTACATACCTGTTGAGGGGGGAATGGATGAATTAGCATTTGCAGATTTCTTGCTTGAGGAGAAACGTAAAGAATTAGTAAAACTTGCGAAGGAGCAAG CTGAAAAGGAAAGACAGGCTGAAGAGCAAAGGCGGATGGAAGAGGACAAAGCTGCAAGGGAAGCAGACAGGTCACAGGCGAGGGTGGAGATTGAGAGAAG GCGAGAATTGTTGCCGCAATTGTTGAAAAATGCTGTAAATTCCCTTGATAATATTTGGTATATTGAGCCTAGTGAATTTAATGACACTGACTTGGTCAGA TTATATTACAACAGAAGCTCAGGTCCTCTTGCACATGCTAAGGAAATATGGATTCATGGAGGGCACAATCATTGGATCGACGGATTATCAATTATCGAAA GGCTTGTCAAATCTGTTGTAAAAGATGGTGATTGGTGGTATGCTGATGTTATTGTGCCTCACAAAGCTATTGTCATGGATTGGGTTTTTGCTGATGGTCC ACCCGAAAGTGCAGCCGTGTATGATAACAATCGTAATCAAGACTTCCATGCTATTGTCACAATGGTCATATCTGAACAGTATTGGGCTGAGGAAGAGCAG CTGATATACAGAAAACTCCAGGAGGAGAGGAAGTTAAGAGAAGAAGCTATGCGCGTAAAGGCTGAAAAAACAGCACAGATGAAAGCCGAAACAAAGGAAA GAACTTTGAAACGTTTTTTGCTTTCTCAAAAGCATATTGTCTTCACTGAGCCTCTTGATGTCCAAGCAGGGAGCACAGCGACGGTATTTTATAACCCCTC CAATACAAATCTGAATGGAAAACCAGAGGTTTGGTTTAGGGGTTCATTTAACCGATGGTCTCACAGTAACGGTCCTTTGCCACCTCAGAGAATGTTGCCT GCAGACAATGGTACCCACGTCAAATCCTCTGTTAAGGTCCCTTTAGATGCATACATGATGGACTTTGTATTCTCTGAGAAGGAAGATGGTGGAGAATTCG ATAACAAATTTGGAATGGATTATCACATACCTGTTTTTGGAGGTATCGTAAAGGAACCACCTCTGCATGTCATCCATATTTCTGTTGAGATGGCCCCAAT TGCAAAGGTTGGAGGTCTTGGTGATGTTGTTACTAGTCTATCCCGGGCTGTTCAGGATTTAAATCACAATGTTGACATTCTTCTTCCGAAGTATGATTGT TTGAACCTCAGCCATGTGAAGGACTTTCACTATCACAATAACTTTTTCTGGGGTGGGACTGAAATAAAAGTATGGCGAGGAAAGGTTGAAGGCCTCTCTG TCTACTTTTTGGAGCCTCAAAATGGATTCTTTCATGTCGGCTGTGTATATGGTCGTGCGAATGATGCAGAGAGATTTGGTTTTTTTTGTCATGCTGCTCT TGAATTTCTACTCCAAAATGGATTTCACCCTGATATCATCCACTGCCATGATTGGTCGAGTGCTCCAGTTGCATGGCTATTTAAAGAAAACTATGTTCAT TATGGTCTTAGCAAAGCACAAGTTGTTTTCACAATTCACAACCTTGACTTTGGAGCCAACTTCATTGCAAAAGCTATGCAACACTCGGACAAGGCTACTA CTGTCTCCCCCACTTATTCAAGGGAGGTTGCAGGACATCCTGCAGTAGCTCCTCATCTTCACAAGTTCCATGGTATAATAAATGGAATTGACCCAGATAT ATGGGACCCGTATAATGATAATTGCATTCCTGTACCGTACACATCAGACAATGTTGTTGAAGGAAAAAGAGCTTCCAAGGAAGCCTTGCAACTAAGGCTT GGTTTGGAAAAGGCTAATCTTCCTTTGGTAGGAATTATTACTCGATTGACTCATCAAAAAGGAATTCATCTCATCAAGCATGCCATATGGCGCACCCTAG AACGTGGTGGACAGATTGTATTACTGGGTTCAGCTCCAGATCCTAGAATCCAAAATGATTTTGTGAGTTTGGCCAATCAACTGCATTCTACTCATAACGC TCGTGCTAGACTTTGCCTTTCATATGATGAGCCTCTTTCACACTTGATATATGCTGGTGCTGATTTCATTCTAGTTCCTTCTATTTTTGAGCCATGTGGA CTCACTCAACTCACAGCAATGAGATATGGTTCAATACCTGTTGTTCGAAAAACAGGAGGACTTTACGACACGGTATTTGATGTCGATCATGATAAGGATA GAGCACAAGCAGAAGGTCTTGCGCCAAATGGATTTGGTTTTGATGGAGCTGATGCTGGAGGTGTTGACTATGCTCTCAATAGGTGAGTTATGTACTATAT AATAAGCAGGTAGTTATGTCTGAACATGAAGAAAAAAACCAATTTGCCAACAGCAAAACTGCGGAATTACGTAACAGCCGGCACAAGTATATAGAAGTTA AACCAATATTTAGTATTGGTATGGTGGATTTTAAAGTTTCTCTAGCCTTAGCTTTTAAGTCAAAAACTCCTTTCACAATTATATATATATCAAGACTCGG CCAATTAGAGGTCATAATCCTCAAGAGTGCTAGTGGCATGTCCTTGATCTATTGCACTTATATGATTGATATTTGGCACTTTTCTCTCTCTTTATTATCA TATTTTGGTAAAATTGTTTTACGGAGTGACCGAACATATTGTATATTTGGAATACATGGTCCCAAAAACAATCATCGTTTGTTGGAAATCTACCTTGAAA TTTTCATGACGAAAGAAAGAAGGGTCGGAAGTGGACAAGTGGTTATGGCATGGCCATAGGAAACCGGAAGCATCATGCATGTCTAAAACTTTTGACACAA AACTATTGCATTGTCTCGCTTGCTCGTGTTAACACATTGCCTCACACTCCCGCACTCGCACCCTAGGCCTGTCAGTGTTTGTTATTATTGAAGTGTTTCA TTTTTTCAGGGCAATATCGGCATGGTACGAAGGCCGCGATTGGTTTAACAGTTTATGCAAGAAGGTGATGGAGCAAGATTGGTCTTGGAACCGTCCTGCA CTAGACTATTTGGAACTATACCATGCAGCACGCAAATCACTATGAGATTGCAATGCAAAATTAAGATTCATTCCATGTTTGCACAGCAGTAGTCTAAAAA TATATAAAGTTGCATATATAGTGAAAAACAATACACATCAGTTTGTAGAAACTAGACTCAATTGGGTCATTATTTTGTTGCTGCTTAGTAAATAATAGTA TAAGGGTACATGTTTAGTATATGCTAAGATATGTTTTCTTGAAATAGCTGAACTTGTGAAATGCATATATTGCAGAATTGATGACATAAATGTGTAATGC AAATTCTTCATTTGCTTTACACAAATTATCATGGCCTATTTCTTTTTTTAACCATGAAAAATGTGTAAATTGTTACACCTTTAATTCATAAATTGAATTT TCTTTTAGAATTATCCTTAAAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_158718; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_508541
| Blastp | Soluble starch synthase 3, chloroplastic/amyloplastic from Solanum with 62.42% of identity |
|---|---|
| Blastx | Soluble starch synthase 3, chloroplastic/amyloplastic from Solanum with 74.69% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019439823.1) |
| Pfam | Starch/carbohydrate-binding module (family 53) (PF16760.4) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |