Ll_transcript_508638

• Id Trinity: TRINITY_DN48180_c5_g2_i3
• Name Transcript: Ll_transcript_508638
• Sequence: GAAACATTGAATGATACACATCCTACATCCTGCTTAATAAATATACCTTATATCTACATAAGCCTTGAGAGTTATATAAGTGTATGAGAACTTCAGAATC ATTTTAGTATCATAGCACCCAAATTTTCCTCTCCCCCATTCTCCTTGAAAAAATCTAACTCCGAAACCAACATCAGAAAGAGAAAGTGCGAGCAGAATAA GGAGCCACTCTTTTTCTCTCTACAAAACAAAGGCAAAGAAACATAAGAAGAAAAAGAAAGACTAGCATATATAGAAGGTGCTACAAGAAACACAACTTTT CATGGCTGTTCAAGCTCAATATCCACCCAATATTCTTCTCCTAAACAGAAATGGTCAAGAAGGAAATGATTACTCATTACAACAAACACAATCAAAAGTT GAACTCCTCGACCAATCCCAAAGTTTATACAACAATGAAAATGCTAATTCTCGCAAAAGAGGAAGAGATGCTATTGTAACCAACCCATCTCCTAATAATA TTATGAACCCATTGTTCTCTATGCAACCACATCCTCTAAAGTTCATTGAGCTCTCTCAACTCCATAATCAACACCAAAATGTGGTTTCGACAGGCTTAGG CTTATCTTTTGGTGACCAACAAAAACAAAGATTACAACTTCATCAACAACCTCAACAACAACAACTACATGGGTGTTATTCATCCTCGTACTTATCTTTA TTGTCTGAAGGGTTTTCTTCACAGATGAAACGACAAAGAGATGAAATTGATCAATTCCTTCATGCCCAGGGAGATGAATTACAGCGTACATTGGCGGAGA AGCGGCAGAAGCATTGCCAGGCTCTGTCACGCGCGGCAGCGGAGGTGGTGGCGCGTCTTTTAAGAGAGAAAGAAGCGGAGATGGAGAAAGCCACGCGCCA AAACGCGGAGTTAGAGGCTCATGCAGCTCGGTTGAGCGCGGAGGCGCAGATGTGGCAGGCCAAGGTGAGGGCGCAGGAGGCGGCGGCGGTATCTTTACAA GCCCAATTGCAGCAGACCATGATGGCACTCGGAGCCGGCGGGTGTCACGGCGGCGACGGCGGCGGCGCAGGGCTGTCATGTGCCATGGATGATGGCCAGG CGGAGGATGCTGAGTCGGCTTATATTGACCCAGACAGAGTGGAAGTCATTGCACCAGTGGAGGCGGCGCGTGCAAAATGTCGGGGATGTGGGAAGCGCGT GGCATCGGTGGTGGTGTTGCCGTGTCGGCACTTGTGCATGTGTGCAGAATGTGATACTCATTTTAAAGCGTGTCCAGTTTGCCATATTCTCAAAAATTCA ACCATTGAAGTGTTAATCTCTTAGGGGTGCCCCACATGCAATTACGTTTTGCAATGCCCTCTATAATTGCACAAACAAAAAAAGAGAAGAAAAAACATAA GATTCTGATAAAAATTAATTAATATAAATAAGGTTACATTTTTGTTTCTCTTTTTTTAATTTAATTGATGGGCATGAAGTTTGGTTTGAGTCTGAGAAAT CAGACCCTCTTGTATGAAATTGAGAGATTACCATAAGGAATTTAATTTTTTATTTAAAAAAGAAACCTTTAGACTTAGTTATGTATCTTCTGTTTTACTG AAGTTCTATTGAAATTTTATATAATACATTATATTCTTTCAA
• Tissue: pods
• Gene name: LI_gene_158814;
• Additional information: details;

Expression of Ll_transcript_508638

FPKM

• PAB: 0.3
• PNAB: 4.1
• PS1: 5
• PS2: 2.4
• PS3: 3
• PW1: 2.2
• PW2: 2.8
• PW3: 1.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_508638

• Blastp: E3 ubiquitin-protein ligase BOI from Arabidopsis with 30.73% of identity
• Blastx: BOI-related E3 ubiquitin-protein ligase 1 from Arabidopsis with 28.57% of identity
• Eggnog: protein binding zinc ion binding(ENOG4111S1X)
• Kegg: Link to kegg annotations (AT4G19700)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019420281.1)
• Pfam: Zinc finger, C3HC4 type (RING finger) (PF13920.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;