| Id Trinity | TRINITY_DN48199_c3_g4_i1 |
|---|---|
| Name Transcript | Ll_transcript_507909 |
| Sequence | ACAACATCACTTTTTAATTCAATATTCTAAAATAAATTTTCACAATCAATATTGTCCCCAAAGAAATTAAAATCTCCTCTAACTCCAGAAGCTTTCGTAC TCTTCCCACTGTTCTCACTGCGCTGCTGCGCCACATGTACCACCATTCAACCTCGGCCGCATCACTGGTTGCCTCCGCCTCTACCTTGAGCACCACCGTC TCTGTCTGAAGCTTCAACACAGTGTAAAGGACTAACCGGGTTCCACTCCAACAAGTTACCATTTTGGTGAGCCATAACTAAATCAACATACACAAATGTC TGTATTTCAAGCAAGAGCCATTCGACATGCACAAACATGTATATCTAGATGCTCTTATACTCTTCATTCTTGTCACTCACACACTCCCCGCTACATGTCT AAGCTTGCTCCTTTGCAGGAGAGGAAAATGAGAGACAGGGTTAAAATATTTGCAAAAGCAGGTGATGGAGGTGGTGGTTGTATCAGCTTTCGCCGTAGCC AACGTGATCGCCATGGCAGACCTGATGGTACAGTCTCTACTCTTTATATTGTATACCTTTATAGCTATGCTGGTTATTACATGAAAAGACATTTATTTTA TTAATGTATTTATTCCACAGTTAAAATATGCTATCACTAATATTTTAATCAGATTGTTGATAAAAAATATGGATGGAGTGCACTGGAGTTGATGGCAATG CTATTTTGATAACTGTGTTTAATGTAGGTGGCAATGGTGGTAGAGGCGGTGATGTGATTTTGGAATGCTCTCGCAGAGTTTGGGATTATAGTGGTTTGCA GCATCACCTAGTATGCACTTATACTTTGTACCAAATTTATGTGAAATTATGAAATTTTCATGTCCAAAAGGTTAGTGACATTAATCTTGCCCCATAGATA GCTGAGAAAGGAGGACAAGGGTTATCAAAGAATAAGATAGGAACCAGGGGTGCTGACAAGGTTGTTCATGTACCGGTTGGCACTGTACTTCATCTTCTTA GCGGTGATATTCCTTCTGTAGTCAAAATTGAATCATCAGCAGATGTAGATCCTTGGGATATTCCGGGTGCACTTGCTGAAGATCTTTCTGACCCTGTTGG TAGTTCTTTCTCCAATGCTACAAGTGGCAAAGCTGAAGTTGAAGCAAGACATCCTACTGGCTGCTCCACATCACAAGGTGCTGAAACAAAGGTTGAGAAA TCTTTAAAATCAAGACAATTTGCACCAACGGATATATCTTCCCAACTTTCCAGTATGGACGACACTCTCAAATTTGGTACAGAAGATATAGGAGAGGAAC AAGAGATACAATACAGTGTGGCAGAATTAACAGAAGAAGGTCAACAAATTATCATTGCTCGTGGAGGAGAGGGTGGTCTGGGCAATGTGTCTATGTCGAA AGATTTAAGGAAGTCTATGGCTACAAAGGTAGGGGCCTATCAAGATAGACCAGATCTTGACGACTCGG BLAST |
| Tissue | pods |
| Gene name | LI_gene_158989; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_507909
| Blastp | Probable GTP-binding protein OBGM, mitochondrial from Oryza sativa with 64.29% of identity |
|---|---|
| Blastx | Probable GTP-binding protein OBGM, mitochondrial from Arabidopsis with 36.73% of identity |
| Eggnog | An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control(COG0536) |
| Kegg | Link to kegg annotations (4351211) |
| CantataDB | Link to cantataDB annotations (CNT0002738) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019453178.1) |
| Pfam | GTP1/OBG (PF01018.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |