Id Trinity | TRINITY_DN48199_c3_g4_i10 |
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Name Transcript | Ll_transcript_507935 |
Sequence | ACAACATCACTTTTTAATTCAATATTCTAAAATAAATTTTCACAATCAATATTGTCCCCAAAGAAATTAAAATCTCCTCTAACTCCAGAAGCTTTCGTAC TCTTCCCACTGTTCTCACTGCGCTGCTGCGCCACATGTACCACCATTCAACCTCGGCCGCATCACTGGTTGCCTCCGCCTCTACCTTGAGCACCACCGTC TCTGTCTGAAGCTTCAACACAGTGTAAAGGACTAACCGGGTTCCACTCCAACAAGTTACCATTTTGGTGAGCCATAACTAAATCAACATACACAAATGTC TGTATTTCAAGCAAGAGCCATTCGACATGCACAAACATGTATATCTAGATGCTCTTATACTCTTCATTCTTGTCACTCACACACTCCCCGCTACATGTCT AAGCTTGCTCCTTTGCAGGAGAGGAAAATGAGAGACAGGGTTAAAATATTTGCAAAAGCAGGTGATGGAGGTGGTGGTTGTATCAGCTTTCGCCGTAGCC AACGTGATCGCCATGGCAGACCTGATGGTGGCAATGGTGGTAGAGGCGGTGATGTGATTTTGGAATGCTCTCGCAGAGTTTGGGATTATAGTGGTTTGCA GCATCACCTAATAGCTGAGAAAGGAGGACAAGGGTTATCAAAGAATAAGATAGGAACCAGGGGTGCTGACAAGGTAATCGGTCTTTATCGGTTCTTTTTC CTTGTAAAATGTTTGAAAATTTTCTTTCCTTTTGTATGGCATCTGCAATGCAGAACTGTGAGTTCATTCCGAAATCATATACTCTAGTAGGTTGTTCATG TACCGGTTGGCACTGTACTTCATCTTCTTAGCGACCATATTCCTTCTGTAGTCAAAATTGAATCATCAGCAGATGTAGATCCTTGGGATATTCCGGGTGC ACTTGCTGAAGATCTTTCTGACCCTGTTGGTAGTTCTTTCTCCAATGCTACAAGTGGCAAAGCTGAAGTTGAAGCAAGACATCCTACTGGCTGCTCCACA TCACAAGGTGCTGAAACAAAGGTTGAGAAATCTTTAAAATCAAGACAATTTGCACCAACGGATATATCTTCCCAACTTTCCAGTATGGACGACACTCTCA AATTTGGTACAGAAGATATAGGAGAGGAACAAGAGATACAATACAGTGTGGCAGAATTAACAGAAGAAGGTCAACAAATTATCATTGCTCGTGGAGGAGA GGGTGGTCTGGGCAATGTGTCTATGTCGAAAGATTTAAGGAAGTCTATGGCTACAAAGGTAGGGGCCTATCAAGATAGACCAGATCTTGACGACTCGGAC AGTGATTACTCCTCCCTGAGTGGAGGCGTGCCTGGTTCCGAGACTGTTCTTATATTAGAGCTCAAGAGCATTGCTGATGTAAGCTTTGTTGGAATGCCTA ATGCTGGTAAAAGCACTCTACTTGGGGCTATCTCAAGAGCTAAGCCTGCTGTTGGCCACTATGCCTTTACCACTCTTAGGCCTAATTTGGGGAATCTCAA CTATGATGATTTCTCAATAACCGTGGCTGATATTCCTGGACTTATAAAGGGTGCACACGAAAACCGTGGACTTGGACATGCATTTCTGCGCCACATAGAG CGCACAAAGGTTCTGGCTTATGTAGTAGACTTGGCTGCTGCTTTAGATGGAAGGAAGGGAATTCCACCATGGGAACAGCTGAAAGACTTAATCCTAGAGC TTGAGTACCACCAGGACGGGTTATCCAATCGGCCATCCTTGATTGTGGCGAATAAGATCGACGAGGAAGGTGCAGAGGAAGTTTATAAAGAGTTACAGAG AAGGGTTCAGGGTGCTACCATCTTTCCTGTGTGTGCTGTTTTGGGAGATGGTATACCAGAACTTAAAGCTGGCCTTAGATTACTTGTCAATAGTGAAATG TCATCTACACTTTCCTTGGATCAAATTTTTATAGATTAGATTACTATTAACAACTACTCATGTATTTGTCCAAACACCCCAGTTAGGAAAGATAGACCTG GAATTGTTCTATGCAGGGTTGAGGCCTTTTTTTGGTACATGCATTTGTGAAATCCAAAATAAACTCCCTAAAAGCAATGGTCTTAGCTTCATCAAACATC TAGTATGTGCCACATTAGTATATTTTTTATATTGTTGTTTTGATTTGGTCATACCAAAA BLAST |
Tissue | pods |
Gene name | LI_gene_158989; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_507935
Blastp | Probable GTP-binding protein OBGM, mitochondrial from Arabidopsis with 68.25% of identity |
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Blastx | Probable GTP-binding protein OBGM, mitochondrial from Arabidopsis with 52.9% of identity |
Eggnog | An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate (By similarity). It may play a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control(COG0536) |
Kegg | Link to kegg annotations (AT1G07615) |
CantataDB | Link to cantataDB annotations (CNT0002738) |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019453178.1) |
Pfam | 50S ribosome-binding GTPase (PF01926.22) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |