| Id Trinity | TRINITY_DN48233_c3_g1_i6 |
|---|---|
| Name Transcript | Ll_transcript_304135 |
| Sequence | CAAGTTTATGCACTGTTCTTCTCCACTCCTCCTTGTCTCATTACCCTGAACCTCTTCATTAGGGTTTTTCCGTTCTCTCTCATTTCCAACACCAAAATGG GAACTCGCTACACCCTCGCTGGTAAGGAAGTCCCCATAACCGGAAGCGACGCCGTTCGCTGGATCGAACTTTCCATTCCCTCTTCTCCCAACATCGCTGT TGACGGCGCCGCCGCCCCTCTCGCACCTCTCACCACCGACGACCGGGCTTCCTGCTTCGTCACCGACAATCCCGCTTCTTATCTCCTCTGGAGAATTCAC CAGACGCAGCCTCATGCTCTCGAGTTACTCGAGCTCGATGCTTCCAAAGAAATCCCCAAAGTTGGACTTAGGTTCAATTTCCCCGTCGCGCTCTGCCCCT TTGCCTTTATCTGCAAAAACCAGATTACTACTGGCTCTTCTATATACCCTTACTCGCTTTATGTGCTGACTGTGACTGGTGTGGCCTATCTTTTGAAAAT TCGAAAAGTTTCGGTATATGCATCCAGCTCCAGCACCATTTTACCAGTGGATGAACTTTTAGAGCTTGATTTGAAAGATTATATTCCCTATAATGTGACA ATAACCGCCATCGCAGCTACTACCGGGTGTCTTGTTATTGGCAGAAGTGATGGTTCTGTTTTCTGTTTCCAACTCGGTGGACTTGACCCAAGTGCTCCTG GTTTTGTGCATGAGCTGAGAGATGAAGCTGGAATCAGCCGTTTATGGGGTCTCATGTCACGGGGTAAACCGGTGGGTACTGTACAAGACATGGTTATATC CGATTTGGATGGGAAAAGATTTGTGTTTGTACTTCATTTGGATGGGACATTACGAATTTGGGATCTCGTGTCTTATAACAGGGTCTTTAATCATACCATG GCAGGTGCTATGTTTTTAAGGTTATGGGTGGGTCAATACAACCCTGATTCAAGTACATTTCTGTTGGCAATCTTGTACAGGGATACTTTGGATGAAAACT TGGAGATGATCTCTTTGCATAGCATCCAACTTAATTTTGGGGATAGAATTGTTTTCTCTATGGAGCCTCCAGTAAAAAATATTCCATTAGACGAGGGACG ATGCCTTGATGCTAAATTGACGATGGATAAGTTATGGATACTGAAGGATGATGAATTAATATCACACACATTCTCTACAAATATTGACGAGTTAGAAGCA CTGTCCTATGCTTTACAGGAAGAATTTGTTGCTGACCAGCTATTTCAAAGTTCAGAACATCTTGCAGATGAAATTATGCGGATTGGACATTCAATATTTT CATCTTCGAAGGATGATATTTTGCCATTTGTATCATCTATTTTCTTACGCAAGCTGCTTCTTCCTGGGGTGCATCATAATGCTGCTTTGCATGCAACTCT TGTTGAGTATGGCAGGCATTTAGTTGAGTCTGAGTTACAAACGTTAACTGCTGATGGGCTAAAAAAGGAGATACTTTCACTTATAGAACATGAGGTTGGT GCTGGAAAAGTGTCCACATTGTGTTGCTGGAAATCTTTTTTCACCCGCTATTTCCATAATTGGTGCAAGAGCAATGCCGTATATGGTTTGCTTGCTGATT CCTCTGTTGGTGCTGTCGGTCTAATAAGAAAAAGTTCAGTCTCACTTTTTCGGTCTTTGGAAGATATTGAGCGGATTTTAGAGGGCTCTTCAGATGAAGT GGGTGCGCTCACGGGCATTGTGGATTTATTTGATGATGATCATGATTGTGAAATTCTGACTGAATTGCTTAGATGTGTAATAAGTTTCAGCCAACAGTTG GGCAAAACTGCTTCTTCCATATTTTATGAGTCACTTTTAACTGCACCAGCAATCTCTTCTGATGATATTATTCGCTGTATAGTAAAAATTCTACAAACTG GGTATTGCATATCAAGTTCAGTTATCGCTGGGGATAGTTTAGTTGTTCTGGATAATGAGCTAGCAGATCATAAAAGTTTGAGGAAACTTTCGGTTGACAT GTTCTTGACACTTCAAGGCTTGTACAAAAAGGCTTCTACATGGGGCAGAATTTTAGATGTGATCGAGGGTTTCCTGAAATTTTTGGTTCCACGAAAAATC ACACATAATTTTGATACTGAAATGCCATCAAATATAAATTCCTCTATTGCAGTTCATACCACTTATCAGATTGCAGAAGTGATGTTTGAATCTGCCTGGG ATTTTCTTCTATTTTTAAGCTATCTGGTGGACATCAGTGGTCAGGTCCATTTGTCCCATGATGATATAACGCGAATACAGCTCGAGTTAGTTCCAATGCT TGAAGAAAATATTTTTGAGTGGTTAATCATCATCTTCTTTTCCATCACACCGTCTGCTCCAGCTGCAATTGAGGACTTCAATTTTAAACTTTCATCATTA CAAATAGATGGAAACATGGGGAAACGATTATGGAATGAGAAGCTTGGCCAATGTGACTTCACATTGGCTTTCATATTCTTTCTAAATGCTGGAAGTTCAT CTGCAGACCATAACCACTTTTATTCAGAACGTTTTTCAAATATGCAGAGCTTTATTAATAGGACAAGAGACTTTATCAGTTGGATAATATGGGGCCAAGC TGGAGGATCTTCTACTTTCTTAAGCCGTTCAATTGATCTTGCCTTTATCCTTTTCAAGCACGGCCAGTATGGTGCTGCTGAGCAATTACTTATGATGGGG GAAACACATTTGCTAAAGGAGAGAACATCCCAAAGTATTCAAGATGCTGATGGTGGATGGTGCATACGTCATCACCTTATAGGATGTTGCCTACTTGCCC AGGTGCAGTGTGGATTGCATGCAACCCAAAAGGATAAGAAAGTCTATGATGCCATTCGCTGTTTCTTTAGGTCTTCATCTGGAAATGGTGCATCTGAGGC TCTGCAGAGTTTGCCTGATGACATAGGAATTCCATTTCTTGGTTTTAGTGGTTGTGAATCATCTGCTGCATGGAGGCTTCAGTATTATCAATGGGCAATG CAGTTATTTGAACGATATAATATTAGTGAAGGTGCTTGCCAGTTTGCTCTTGCTGCACTCGAGCAAGTTGATGAAGCTCTTTGTAGGAAAGATGAAAAGT TCATGAGCAACTCAGTTGACGAATCAATGACGATCAAGGGACGACTGTGGGCAAATGTCTTCAAATTTGCATTAGACCTTTGTCGCTATTATGATGCGTA TTGTGCAATAATTTCAAATCCAGATGAGGAGAGCAAATACATTTGCTTGAGGCGTTTCATAATTGTTCTTTATGAACAAGGTGCTATAAAGATTCTATGC CGTAATAAAATTCCCCTTATTGGTTTAGTGGAAAAGGTAGAGCAAGAGCTTGCTTGGAAGGCTGAACGGTCAGATATTTCTGCGAAGCCAAACTTGTATA AGTTGCTCTATGCGTTTCAAATGAATCAGCATAATTGGGGACGAGCGGCAAACTACATGTACCTTTATTCAGCTCGTTTGAGAACTGAAGCCGCTTTGAA AGATCACCAAGGTGGTTCCTTGATGTTGCAAGAGAGGCTTAATGCACTTTCTGCTGCTGTCAATGCACTGCATCTTGTTCATCCTGCATATGCTTGGATT GATCCACCGTCTGAGGGAAGTTCTGCTTTGAGTGAACATTATCCGAGCAAGAAAGCAAGAATAACACCAGATGAACATTCTGATAATGATTTTGAGTCTC AAAGCTGGAAGCCCTCTATCGATATTGAAAAGCTTGAGAATGAGTTCGTTCTAACTTCAGCAGAGTATATGCTGTCCCTGGTAAATGTCAAGTGGACATT TAATGGAAAACATGGAGCCCTATCGGATTTGGCTGATCTTCTTGTCCAAAACAATTTATATGACATGGCCTTTACAATTGTTCTCAGATTTTTCAAGGGT TCAGGACTGAAGAGGGAACTGGAAAGAGTTCTATCTGCCATGTCATTGACATGCTGTGTTGATAAAGTAGAATCCACTCGGGTTGAGGAACATGGTCATT TCTTGACATCATCAAAGCTTGAGATGGTTGTCCATGGTTCACCTGTTACAGGTCCTACAACTCCACAAACTGACAGAAATAGCTTTTGGGCAGCTCTCAA GCTTTACCTCGAAAAGTATAAGGAGTATCATGGTAGATTACCAGTTATTGTTGCTGAAACTCTTCTACGCACTGATCCACAAATTGAATTGCCTCTTTGG CTTGTTCAATTGTTCAAGAATTGCTGGTTTTGTTGAAGATGGTTATGGTAGGCGATCCTCCAAGTTTCTGATAGATTAGTCAGCAATGAAGGGGACATGT TAAGTGATTTCATGGTCATTGTGATAGATTTTATATGACCGAGCAAGATTGAAGGTTAACATTAACCACATCCGACTCAAGGAAATTCTTAAAAGAACCA TTTGTAGTTAAGAACATATATTGGGCGTAGATACCAACCTTTTCTTAGTAAGCTAAATTTATTGTTGATTATTAAAACATGACAGCTATTGCTAAATCTA AGTTCTTTCACTTCAAATGGGCCTCCTTTGATTGTTGTATGGAAAGGATGTGATGAACATTGAGCTTGAATCAGCCTCAAAATCAATCACACTCACCTGA TCTCTTATGCCCCTTTCATGGCTGTCTCTCCATCTTGGAGGATTGGCTGCACCCACCCCTTACCAAACTGGACAATCTGGGCTGCTACACCTTGCATTGC TCTACACAATATACCTTTTTTCTTTAATCATGTTACCATGGTTGCTATAATATAGGATCTTGTATGATATTGTTTACATGGCTTGACAGGAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_159267; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_304135
| Blastp | Nuclear pore complex protein NUP160 from Arabidopsis with 45.82% of identity |
|---|---|
| Blastx | Nuclear pore complex protein NUP160 from Arabidopsis with 45.82% of identity |
| Eggnog | Nucleoporin 160kDa(ENOG410YYM5) |
| Kegg | Link to kegg annotations (AT1G33410) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019461186.1) |
| Pfam | Nucleoporin Nup120/160 (PF11715.7) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |