Id Trinity | TRINITY_DN48233_c3_g1_i8 |
---|---|
Name Transcript | Ll_transcript_304137 |
Sequence | CAAGTTTATGCACTGTTCTTCTCCACTCCTCCTTGTCTCATTACCCTGAACCTCTTCATTAGGGTTTTTCCGTTCTCTCTCATTTCCAACACCAAAATGG GAACTCGCTACACCCTCGCTGGTAAGGAAGTCCCCATAACCGGAAGCGACGCCGTTCGCTGGATCGAACTTTCCATTCCCTCTTCTCCCAACATCGCTGT TGACGGCGCCGCCGCCCCTCTCGCACCTCTCACCACCGACGACCGGGCTTCCTGCTTCGTCACCGACAATCCCGCTTCTTATCTCCTCTGGAGAATTCAC CAGACGCAGCCTCATGCTCTCGAGTTACTCGAGCTCGATGCTTCCAAAGAAATCCCCAAAGTTGGACTTAGGTTCAATTTCCCCGTCGCGCTCTGCCCCT TTGCCTTTATCTGCAAAAACCAGATTACTACTGGCTCTTCTATATACCCTTACTCGCTTTATGTGCTGACTGTGACTGGTGTGGCCTATCTTTTGAAAAT TCGAAAAGTTTCGGTATATGCATCCAGCTCCAGCACCATTTTACCAGTGGATGAACTTTTAGAGCTTGATTTGAAAGATTATATTCCCTATAATGTGACA ATAACCGCCATCGCAGCTACTACCGGGTGTCTTGTTATTGGCAGAAGTGATGGTTCTGTTTTCTGTTTCCAACTCGGTGGACTTGACCCAAGTGCTCCTG GTTTTGTGCATGAGCTGAGAGATGAAGCTGGAATCAGCCGTTTATGGGGTCTCATGTCACGGGGTAAACCGGTGGGTACTGTACAAGACATGGTTATATC CGATTTGGATGGGAAAAGATTTGTGTTTGTACTTCATTTGGATGGGACATTACGAATTTGGGATCTCGTGTCTTATAACAGGGTCTTTAATCATACCATG GCAGGTGCTATGTTTTTAAGGTTATGGGTGGGTCAATACAACCCTGATTCAAGTACATTTCTGTTGGCAATCTTGTACAGGGATACTTTGGATGAAAACT TGGAGATGATCTCTTTGCATAGCATCCAACTTAATTTTGGGGATAGAATTGTTTTCTCTATGGAGCCTCCAGTAAAAAATATTCCATTAGACGAGGGACG ATGCCTTGATGCTAAATTGACGATGGATAAGTTATGGATACTGAAGGATGATGAATTAATATCACACACATTCTCTACAAATATTGACGAGTTAGAAGCA CTGTCCTATGCTTTACAGGAAGAATTTGTTGCTGACCAGCTATTTCAAAGTTCAGAACATCTTGCAGATGAAATTATGCGGATTGGACATTCAATATTTT CATCTTCGAAGGATGATATTTTGCCATTTGTATCATCTATTTTCTTACGCAAGCTGCTTCTTCCTGGGGTGCATCATAATGCTGCTTTGCATGCAACTCT TGTTGAGTATGGCAGGCATTTAGTTGAGTCTGAGTTACAAACGTTAACTGCTGATGGGCTAAAAAAGGAGATACTTTCACTTATAGAACATGAGGTTGGT GCTGGAAAAGTGTCCACATTGTGTTGCTGGAAATCTTTTTTCACCCGCTATTTCCATAATTGGTGCAAGAGCAATGCCGTATATGGTTTGCTTGCTGATT CCTCTGTTGGTGCTGTCGGTCTAATAAGAAAAAGTTCAGTCTCACTTTTTCGGTCTTTGGAAGATATTGAGCGGATTTTAGAGGGCTCTTCAGATGAAGT GGGTGCGCTCACGGGCATTGTGGATTTATTTGATGATGATCATGATTGTGAAATTCTGACTGAATTGCTTAGATGTGTAATAAGTTTCAGCCAACAGTTG GGCAAAACTGCTTCTTCCATATTTTATGAGTCACTTTTAACTGCACCAGCAATCTCTTCTGATGATATTATTCGCTGTATAGTAAAAATTCTACAAACTG GGTATTGCATATCAAGTTCAGTTATCGCTGGGGATAGTTTAGTTGTTCTGGATAATGAGCTAGCAGATCATAAAAGTTTGAGGAAACTTTCGGTTGACAT GTTCTTGACACTTCAAGGCTTGTACAAAAAGGCTTCTACATGGGGCAGAATTTTAGATGTGATCGAGGGTTTCCTGAAATTTTTGGTTCCACGAAAAATC ACACATAATTTTGATACTGAAATGCCATCAAATATAAATTCCTCTATTGCAGTTCATACCACTTATCAGATTGCAGAAGTGATGTTTGAATCTGCCTGGG ATTTTCTTCTATTTTTAAGCTATCTGGTGGACATCAGTGGTCAGGTCCATTTGTCCCATGATGATATAACGCGAATACAGCTCGAGTTAGTTCCAATGCT TGAAGAAAATATTTTTGAGTGGTTAATCATCATCTTCTTTTCCATCACACCGTCTGCTCCAGCTGCAATTGAGGACTTCAATTTTAAACTTTCATCATTA CAAATAGATGGAAACATGGGGAAACGATTATGGAATGAGAAGCTTGGCCAATGTGACTTCACATTGGCTTTCATATTCTTTCTAAATGCTGGAAGTTCAT CTGCAGACCATAACCACTTTTATTCAGAACGTTTTTCAAATATGCAGAGCTTTATTAATAGGACAAGAGACTTTATCAGTTGGATAATATGGGGCCAAGC TGGAGGATCTTCTACTTTCTTAAGCCGTTCAATTGATCTTGCCTTTATCCTTTTCAAGCACGGCCAGTATGGTGCTGCTGAGCAATTACTTATGATGGGG GAAACACATTTGCTAAAGGAGAGAACATCCCAAAGTATTCAAGATGCTGATGGTGGATGGTGCATACGTCATCACCTTATAGGATGTTGCCTACTTGCCC AGGTGCAGTGTGGATTGCATGCAACCCAAAAGGATAAGAAAGTCTATGATGCCATTCGCTGTTTCTTTAGGTCTTCATCTGGAAATGGTGCATCTGAGGC TCTGCAGAGTTTGCCTGATGACATAGGAATTCCATTTCTTGGTTTTAGTGGTTGTGAATCATCTGCTGCATGGAGGCTTCAGTATTATCAATGGGCAATG CAGTTATTTGAACGATATAATATTAGTGAAGGTGCTTGCCAGTTTGCTCTTGCTGCACTCGAGCAAGTTGATGAAGCTCTTTGTAGGAAAGATGAAAAGT TCATGAGCAACTCAGTTGACGAATCAATGACGATCAAGGGACGACTGTGGGCAAATGTCTTCAAATTTGCATTAGACCTTTGTCGCTATTATGATGCGTA TTGTGCAATAATTTCAAATCCAGATGAGGAGAGCAAATACATTTGCTTGAGGCGTTTCATAATTGTTCTTTATGAACAAGGTGCTATAAAGATTCTATGC CGTAATAAAATTCCCCTTATTGGTTTAGTGGAAAAGGTAGAGCAAGAGCTTGCTTGGAAGGCTGAACGGTCAGATATTTCTGCGAAGCCAAACTTGTATA AGTTGCTCTATGCGTTTCAAATGAATCAGCATAATTGGGGACGAGCGGCAAACTACATGTACCTTTATTCAGCTCGTTTGAGAACTGAAGCCGCTTTGAA AGATCACCAAGGTGGTTCCTTGATGTTGCAAGAGAGGCTTAATGCACTTTCTGCTGCTGTCAATGCACTGCATCTTGTTCATCCTGCATATGCTTGGATT GATCCACCGTCTGAGGGAAGTTCTGCTTTGAGTGAACATTATCCGAGCAAGAAAGCAAGAATAACACCAGATGAACATTGTAAGTAATTCAACAACCAAA TTCATGTCACTAGTCATGAACTTATCATTTCATTATGTTGTCAAATTTTTTGCTTCTCTGTATTTTTAGCAGAATGAGATGTGAGGGTGAAATGGTTCTT ATTTAATATTCGATATATTGGGTATTATGTTTTTCACATTTGTGCTAAGTTTAAAGGGGTATTCTTAGGGTAGCTTTGCTTTATTGTGTTTTTTGGTTCT CTTTTGTTTGTTTTTTCCTTTTTTTATTTTTATTAGAGGTATCTCTTATGCTCCATACTCTTGGTTGGTAATAGTATACTCTGTCTTGATGAATTTCTTG TTTTATCTTTTATTTTTTCCTAATATTGCTTGGAGAGATGGCAATATTATTTATTAACATTGCTGTACCAGCTGATAATGATTTTGAGTCTCAAAGCTGG AAGCCCTCTATCGATATTGAAAAGCTTGAGAATGAGTTCGTTCTAACTTCAGCAGAGTATATGCTGTCCCTGGTAAATGTCAAGTGGACATTTAATGGAA AACATGGAGCCCTATCGGATTTGGCTGATCTTCTTGTCCAAAACAATTTATATGACATGGCCTTTACAATTGTTCTCAGATTTTTCAAGGGTTCAGGACT GAAGAGGGAACTGGAAAGAGTTCTATCTGCCATGTCATTGACATGCTGTGTTGATAAAGTAGAATCCACTCGGGTTGAGGAACATGGTCATTTCTTGACA TCATCAAAGCTTGAGATGGTTGTCCATGGTTCACCTGTTACAGGTCCTACAACTCCACAAACTGACAGAAATAGCTTTTGGGCAGCTCTCAAGCTTTACC TCGAAAAGTATAAGGAGTATCATGGTAGATTACCAGTTATTGTTGCTGAAACTCTTCTACGCACTGATCCACAAATTGAATTGCCTCTTTGGCTTGTTCA ATTGTTCAAGGAGGGTCAAAGGGAAAGGATGTGGGGAATGACTGGCCGGGAGTCAAATCCAGCATCCTTATTTCAGCTTTATGTTAACTATGGTCGATAT GCAGAAGCTACTCATCTTTTGCTAGAGAGCATAGAATCATTTGCTTCAACGAGACCAGCAGATATAATTAGAAGGAAAAGACCATTTGCTGTTTGGTTCC CATACACAACAATTGAGCGTCTACTGTACCAACTTGAGGAATTAATCAAATTGGGTCACATGGTAGATCAATGTAACAAGCTCAAAAAGATGTTGCATGG TTCTTTACAAAATCACCTGAAGACGTTAAAGGTGGACTCAGATGATGCAATTTCTGCTTCTTCTTGACTGCATCTTTAAACTGGTTACTAAAGGCTCTTA CTGATAGATATACAAGTATATTCATTCTGCTCTGGTGTTGATCTCTCTGCTGAACAGCATAATATCCAATGTGAAGTGCTAGACACATAATGTTAAAATT GTGGTGGAAGAACCATGCTCAAACTAAATCACCCTCTTACCACAGAAACAACAAAACTAATCGAATTGCGGCCGCCTCATCTTCTCAGGAGTAGGAGGTG TACTAGTCTCCAGGGAAACTCGTCCGGAAATTGTATGTGCGTTATCTGAAAATTGTATGTGCCTTTGTTTGATCTTCGATGTTATGGCTATATTGGTACA GTACAGTTCAACTGATTGCTGGGAAATTTTGATTATATAATTATTTGTGTATGAATATGCGTCTTATTCCACCTGATTCCTGGGGCTGGCTTAATGCGAT GATGTGAAAATCACAATTTTAACAATTTTAAAGTGATGTGAAAATCAACTCAAAAATATGTAAGTCTCT BLAST |
Tissue | pods |
Gene name | LI_gene_159267; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_304137
Blastp | Nuclear pore complex protein NUP160 from Arabidopsis with 45.46% of identity |
---|---|
Blastx | Nuclear pore complex protein NUP160 from Arabidopsis with 45.42% of identity |
Eggnog | Nucleoporin 160kDa(ENOG410YYM5) |
Kegg | Link to kegg annotations (AT1G33410) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019461186.1) |
Pfam | Nucleoporin Nup120/160 (PF11715.7) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |