Ll_transcript_302579

• Id Trinity: TRINITY_DN48290_c0_g1_i3
• Name Transcript: Ll_transcript_302579
• Sequence: AGGAAAGTTAAAAAAAACCGCACATATTTTTAGTCTTTTTGCGTGTTCCTCTTCACTCCTCAGTCCTCAGTAGTAGTGCGCAAAACCTCACCCTGTTATT GGAAACTTGAAAGCAACGAAACTTGGATCGACCCATTATCTGAGATCCATAAAAAATGAATATTTTCAGGTTATCTGGGGACATCACCCATTTGGCAAGT GTCCTCGTTCTTCTCCTCAAGATCCACACCATCAAATCCTGTGCTGGTATCTCGTTGAAGACTCAAGAACTCTATGCACTTGTTTTTGCTTCTCGCTACT TAGATATCTTTACTAATTATATATCCCTATATAATACCACTATGAAGTTGATATTCTTGGGAAGTTCATTTTCTATTGTATGGTACATGAGGTACCAGAA GATTGTTCGTAGGACATACGACAAAGATCAAGACACCTTTCGCCATTATATTCTTATACTGCCATGCTTACTATTGGCTCTAGTTATCAATGAGAGATTC ACATTTAGGGAGGTGATGTGGGCATTTTCCTTGTATTTGGAAGCTGTTGCTATACTTCCTCAACTAGTGCTGTTACAGAGAACTAGAAATATTGATAATT TGACAGGACAATATGTTTTTCTTCTTGGTGCGTATCGAGCACTATACATTCTCAACTGGATCTACCGCTACTTTACCGAGCCGCACTTTATCCACTGGAT AACATGGATTTCTGGCCTTGTTCAAACACTGCTCTATGCCGACTTTTTCTATTACTATATCCAAAGTTGGAAGAACAACCAAAAGCTTCATCTGCCAGCA TGAGTTCCATAGTTCTTGAAAAGCAAGGTTCTTCTGTGGACAATTAACACTGAGCAAAACATGATCCATGTATTTTTTTCTGGGCATGTGATTTCTGAAT TATGATTCCATATATGTTGATTCTTGGTCCCTCATATACTACTAATTACAAAAATACATCAACTATAATGCAATTTTAACTTGAGAAAGTATTGATATAT TACCATTATTGTATTATCT
• Tissue: pods
• Gene name: LI_gene_159809;
• Additional information: details;

Expression of Ll_transcript_302579

FPKM

• PAB: 3.2
• PNAB: 7.5
• PS1: 7.6
• PS2: 5.5
• PS3: 8.7
• PW1: 8.5
• PW2: 10
• PW3: 8.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_302579

• Blastp: ER lumen protein-retaining receptor B from Arabidopsis with 82.79% of identity
• Blastx: ER lumen protein-retaining receptor from Petunia with 86.51% of identity
• Eggnog: Required for the retention of luminal endoplasmic reticulum proteins. Determines the specificity of the luminal ER protein retention system. Also required for normal vesicular traffic through the Golgi (By similarity)(COG5196)
• Kegg: Link to kegg annotations (AT3G25040)
• CantataDB: Link to cantataDB annotations (CNT0001350)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019461706.1)
• Pfam: ER lumen protein retaining receptor (PF00810.17)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;