Ll_transcript_303027

• Id Trinity: TRINITY_DN48291_c0_g1_i15
• Name Transcript: Ll_transcript_303027
• Sequence: GTTGAGTTCAGACCATTTTCTCATCTGACATTCCTATTCGGATTTTCATTCTCAAAACCCACCAAACTAAGACAATTACTCTCTTTCCTTTTTCTCATTT TCTTCTTCTGAATCAGTAGCGGGTGCCATTTTAGAAGTAAAAGCAAGTTCTGAATTGGTACTTCCTCTCTCATAAAGGAGTTTCATTTAAGCTCCATAAG CTGGATTCTGAGGTGCCCATCACAAAATGGCAAAGCGTGGATACAAAATACAGGAATTTGTGGCTCATTCAGGAACTGTTAATTGTTTGAATCTCGGAAA GAAGGAGTGCCGCCGTTTCATTACAGGAGGAGATGATCACAAGGTCAATTTATGGACTATTGGCAAACCAACTTCTTTAATGAGCCTATCAGGTCATAAT AGTCCAGTCCAATCCTTGGCTTTTGACTCAGCAGAAGTATTAGTTCTTGGTGGAGCATCATCGGGTGTGATAAAGCTTTGGGATTTGGAAGAAGCAAAGT TGGTTCGCACTGTTGCTGGACAAAGATCCAGTTGTACTGCTATTGAATTTCATCCATTTGGTGAGTTTTTTGCATCTGGCTACACGGATGCTAATCTTAA GATTTGGGATATCCGTAAAAAAGGATGCATTCATACATACAAGGGTCACAGCCAGGGCATCAACACTATCAAATTCACTCCAGATGGCCGTTGGGTAGTT TCCGGTGGACTTGATAATGTCGTGAAGGTGTGGGATCTAACCGCTGGAAAGCTCTTGCATGACTTCAAGTTCCATGAAGGGCACATTACGTCCATAGATT TTCATCCTCTAGAGTTTCTTCTAGCTACAGGTTCAGCAGACAGAACAGTGAAATTTTGGGATTTAGAAACTTTTGAAATGATTGGATCTGCCAGACGCGA GGTTTCAGGGGTACGCTCAATAGCTTTTCATCCCGATGGTAGGACCCTGTTTACTGGACTTGAGGATGGTTTGAAGGTCTATTCATGGGAACCTGTCATA TGTCATGATACTGTTGATATGGGATGGACAACACTTGGTGATCTCTGTATTCATGATGGAAAACTTTTAGGGTGCTCATACTTTCGAAATTCTGTTGGAG TCTGGGTTGCAGATATATCGCTTATTGAGCCATATGCTGATGGTTTTGATCCTAAGAAGAAAAGTGAAGGTACAGAGCAGAAACTTAGTCTTCATGGAAG TGAACTTGACAAAGTAGAAGTTGATGTGGGACCGACTTCTGGGTTCCGCAATATGTCTCCCGATGAGTCAAAGGAGATAAAAAATATATACATCGACTGT AAGCCACCGACTCTTTGTTTCCATTAGTTACTCCATAAAAATTGAAATTCTGTACTAACTAGTTGCAGTGTTGCATTTCATGGCAAGCTATAGCCTGCAA AAAAGTAATTCCCCTGACCGTGACATTTCTTAATTTTCCTTTAAGTTTCCTTACTGAAACTATTTTGCTAACTTTCATAAGTCTCTGTCTTTCTTTAAAG TGTCAAGTAATACCCCACGTCGGCATTGATTGACTTGATAAACCTAATTTGTACTAACCTATTGATGCTTCACATTTGACTGGTTGATGTATTTGCTTTT TGTAGTGTAACTTCCATTACAAACACAGTATGATTTTGTTTTATTTTTTAATTGGATTTGGCTTTGTTAAAGTTCTGAACAAATCAGGTTTGGAAAATAG AGTTTGCAACATATAGTTCTTCTAAGAAGATTCATAGGTAGGTGCATCCATTGCTTTAGTGGCTTGTTTCAGTGAAGGATTTGAGGACAATTTTCTTGTA GTGGGTCAAGCTGTAAATTGAACTTTACATGCAAGCATGTAGTAAGTTCCTAACATGATGAGTGATGTTTATATATATTTGTGTGTTCTGGTCTCTTGAG GGTGAGACTCAGCGCAACGTTGTTTGCCTTTTGACCGTACATCTACCCTCCTCATATCCCACTAGGTGGGAGCATCGTGCATTGGGCCACCCTTCATATG TATCTAATGAATTGCTATTTTCTTCCAAAGGTTCTGGAGGGAAACCTGTTGCTTTACAGAAATCTTCATCTTTTAATTCTTCAAAAGTAGATCTCCCAGA GGAATCTGTGGATATTTCTAAATCGGGAGCATTGAAGCAGAGTCCTGCAACTGGAGTTCATGTAAAATCTATTGAACAAGTGCAAAGAAAATCTCCAGTT GTGCAAAACATTGAATCTCGAAACATTCCTGATGGTAAGGACACAGAAAATTCTGGAAAGGAGACCATCACCTTTTCAAAGACTAGGCCTGGAATGCTAC TTAAACCAGCTCATGCAAAAAGAGCATCCACTCACATATTTGATGTTGATAAGTATTCAGAAGATGTAAATTCTGAAACTTTTTGTGATACTGCAAGAAA ACTCGACAGTACAAAAGATTCTGAGTTCCAAGTGAATCTAGGATCACTGAATGAAGTAACAGAATCTTGTGAAGATAAATATCCTACCAAGACTGTCACA GACAAGTTGGACGAGACTATATCTCTGCAGAGATTATCCGACCAAGCAAAACGTGATGAGTCTTCTTTTTGCAATGAAGAGATCAATCCGGTCAAATATG TCAATGGAGTTGCTGTTGTACGAGGAAGGACTCGCTCTCTAGTGGAGAGGTTTGAAAGAAGGGAAAAAGTTCAAATCGATGAAGATCAAACTAATTCTAC TCTCCCCGCAATAAATGAAGAGAGGGAAAAAGTTCACAATGAAGACCAAGTTAATGTATCCTCCACTGGGGTATTTGAGAGGAGGGAAAAAATTCCCCGC AATGAAGATCAAAACAATATGCCTTCCATTCCCAACACAATATCTGAAACCTCCACCCTGGCATTTGAGAGGAGGGAAAGAATTCCCCGCGATGAAGATC GAAACAAAATTTCGAGGGAAAGAACTCCTCCTAATGATGATCGTAACAATATGCCCTCCATTACAAGCACAATATCTGAAACCTCCACCATGGCATTTGA GAGGAGGGAAAAAGTTCCCCCCAACGAAGATCAAAACAGTATGCCCAGGGAAATAACTCCTCGTAATGAAGATCGAAACAATATATCCTCCTTTCCCAAC ACAATATCTGAAACCCCCACCATGGTATCGGAGAGGAGGCAGAGAAGAGAAAGAATTCCCCGCAATGAGGATCTAAACAATATGCCCTACATTCCCAATG CAATATCTGGATTGGATAAGTCTCCCACCATACTGAAAGTTGAGCCTCAAACTTCTGGAGGGGATTCAAAATCTGGAAATGAAGGACAAATCATTGAAGC TCTGTTGCAAACTCATGATGTAACATTGAGTACTCTTCGTTCACGCTTGACAAAGTTACAGGTGGAGCGGCATTTTTGGGAGCGTAATGATATTAAATTT GGCATTAATGCTTTGAGAAAGCTTCGTGATCAATCTGTTCAAGCAGATATTATTAGTGTCCTTGTGGAGAAGATGGAAATTCTCACCTTAGATTTATTTT CTTGCTTACTTCCTGTGCTCACAGGCTTGCTAGATAGCAAAACAGAAAGACATGTAAAGTTGTCACTGGATATGCTACTAAAGCTTGTAGCTGTTTTTGG TCCGACAGTACATGAAACAGTTTCAGCACCTCCCTCTGTTTCGGTTGATCTACATCAAGAGCAAAGGCGGGAATGTTGCAATCAGTGCGTTATGGAACTG CAAAAGATACAAATGACTCTTCCTATAGTAATACGGAAGGGTGGCTTATTGGCCAAGTCTGCCCTAGAGCTGAATCTGGTTCTTCAACAATCCTAACCGA AGATGTTGTATGAATTGAACCAAAAGGAGTAAACATAGTTCCATATGCTCTTAAGCATGATTATGCTCCTTCATGTTTGGTTATTGTGATGCGGCCTACA ATTTTGTCTCGATGATTTGCTCAGTTAGCTGTCATCATCCGCTTTGTGGATGGAAGGACCTTATATAGTAACATGATATTTCTGAGAAAGGTGAATGACT TACTTTACATTGTATCAAGACACAAGACACTTGAAGGTGGAATCAAATACCTAATGATCTTTGGTCTTTAACGGTTCTCAAAGGCTTGTGTTCCTAACTT CAGTTCCCAGGTCTTGACCATTCCTTGTATGTAGTCTTTGTTTTTTGTTCAATTTGTTCTTTCTTGTAGTGATAGTGTGACACTGACCCCGTATGTATTT GTGGGGGCTTGGTGCATATGTAAAGGGTCTCATGTAGTCATGTTATTGTATCATATAGTAGGAAATTAAAACCAAAGTTACTTTTACTTTAGGTATTTTT GAAGGTTTAGAAAATCTAAATAAGTGTTGAATAAGTAAAGGGTCTCATGTTACTTCGATTGGTCTAGTATAATTTTCTATGATCATGATTGGTCTTTATG CTATACATCTTTGTTGGATAAGTATGACTATGTAGTTCCCTAAGACTAGTTGAGGAAGTTGCAGAATGCCTAATAAATGAGCTTTTAT
• Tissue: pods
• Gene name: LI_gene_159812;
• Additional information: details;

Expression of Ll_transcript_303027

FPKM

• PAB: 0.4
• PNAB: 1.2
• PS1: 1.4
• PS2: 1
• PS3: 1.6
• PW1: 0.8
• PW2: 1.2
• PW3: 1.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_303027

• Blastp: Katanin p80 WD40 repeat-containing subunit B1 homolog from Arabidopsis with 46.7% of identity
• Blastx: Katanin p80 WD40 repeat-containing subunit B1 homolog from Arabidopsis with 64.81% of identity
• Eggnog: Katanin p80 (WD repeat containing) subunit B 1(ENOG410XQAC)
• Kegg: Link to kegg annotations (AT5G23430)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019418886.1)
• Pfam: con80 domain of Katanin (PF13925.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;