| Id Trinity | TRINITY_DN48291_c0_g1_i23 |
|---|---|
| Name Transcript | Ll_transcript_303036 |
| Sequence | CAGCTTTAAATCTGAAAAGAAAATGAAATGCTAGCCATTGAATTTTCCTCTTTCTCACTTTTCATGAATCTGAAAATCTTTTATTATTATTATTATTATT AATATTATAATCTGACATATAATCTAGTTCAATAAAATTCATACCTTACCGTTTCGGATTTTGATTTTTTACCAACCAAGTAAACTAATTTCTCTCCTTG TGAATCGTGTTGGAGTAATAGTAGCTGAAGCTGAATTAGCAAGCTCCATTTTTTACTTAGACCCATGTTCTGAATTGCTCTTTCTTCTCATAAAAGAGTT TCATTTCTGCTTCAGAAGCTGGATTCTGAGGTACCCATCATAAAATGGCAAAGCGTGGATACAAAATACAGGAATTTATGGCTCATTCAGGAGCTGTTAA TTGTTTGAAAATTGGAAAGAAAGAGTGTCGTCGTTTCGTTACAGGAGGAGATGATCACAAGGTCAATCTTTGGACCATTGGCAAACCAACTTACTCAATG AGCCTGTCTGGTCATAGTAATCCAGTCCAGTCCTTAGCTTTTGACTCGGCAGAAGTTTTAGTTCTTGGTGGAGCATCTTCGGGTGTCATAAAGCTTTGGG ATTTGAAAGAAGCGAAGATGGTTCGCACTGTTGCTGGACAAAGATCCAGTTGTACTGCTATTGAGTTTCATCCGTTTGGTGAGTTTTTTGCTTCGGGCTA CATGGATGCTAATCTAAAGATTTGGGATATCCGGAAAAAAGGATGTATTCATACATACAAGGGTCATAGCCAGGGCATCAGCAGTATCAAATTCACTCCA GATGGCCGTTGGGTAGTTTCTGGTGGACTTGATAATGCCGTGAAGGTGTGGGATCTAACAGCTGGAAAGCTCTTGCATGACTTCAAGTTCCATAGAGGAC ACATTATGTCCATAGATTTCCATCCCCTAGAGTTTCTTATGGCTTCAGCTTCAGCAGATAGAACAGTGAAATTCTGGGATTTAGAAACCTTTGAACTGAT TGGATCTTCCAGACGTGAGGGACACAATCAATAGCTTTTCATCCTGATGGAAGAACCCTATTTACCGGACATGAGAATGGTTTGAAGGTGTATTCATGGG AACCTGTTATATGTCATGATACTGTTGATATGGGATGGACAAAACTTGGTGATCTCTGCATTCATGATGGAAAACTTTTGGGGTGCTCACACTTTCGAAA TTCCGTTGGAGTCTGGGTAGCAGATATATCGCTTATTGCGCCATATGCTGATGCCTCTGATCCTAAGAAGAAAAGTGAAGATACAGAACAGAAACTTGGC CTTCATGGAAGTAAACTGAACAAAGTAGAGGATGATGTGGGACCAACTTCTGGGCTCCACAGTATGTCTCCTGATGAGTCAAAAGAGATAAAGAATATAT ACATTGACTGTAAGCCACTGACTCTTTCTATCCCTTAGTAGCTCCTTGAAAATTGAAATGATGTATTAATTAGTTGTTGCATTTAATGGCAAGCTATTGC CTGCCTATTAATAATTCCTCCGAGCGCCGACTGTGACATTTCTTAATTCTCGTCTTTTCGATTTCCTTATTGAAACTATTTTGCTTGCTTTCGTAAGTCT CTCTTATTCTTTAGTGTCAAGTAATACCCACATGGGCATTGTTTGACTTGATAGACCTAATTTGTACTAACCTCCTGATGCTTCACATTTGACTGGTTTA TCTATGTGCTTTGTAGTGTAACCTCCATTAGAAACACGATATGATTTTGGTTTATTTTTCATTTGGGTTTGGCTTTGTTAAAGTTCTGAAACAATTCAGC TTCAAAAATAGAGTTTTCACCATATAGAACTTCTAAGCAGAATGAAAGATTGGTGCTTCCATTGTTTTAGTGGCTTGTTTCAGTGAAGGATGTACTGACA TTTTTCTTGTAGTAGGTCAAGCTGTAAATTGAACTTTACATGCAAGCATGTAGTGAGATCCTAACATGATGAATGTCGATTATATATTTGTGTGTTCTGG TCTCTGTATTAATCATTCTGATTACTCTGCCATATTGTATATAATGAAGTGCTATTTTCTTCCATATAAGCTTCTGGAGGAAAACCCGTTGCTTTACAGA AATTTGAAGCTTCTAATTCTCCAAAAGTAGATCTCTCAGAGGAATCTGTCGAAAATACTAAGTTGGGAGCATTGAAGCAGACTCCTGCAACCGGAATTCA TGTAAAATCTAGTGAACAAGTGCTAAGAAAGTCACTCATTGTGCCTGACATTGTTCCTCGAGAAACTCGTGATAATAAGGACTTAGAAAGATGTGGAAAA GAGACCACCACCTTTTCAAAGACGAGGCCTGGAATGCTACTTAAACCAGCTCATGCACGGAGAGCATCCACTGGCAGATTTGATGTCGATGAGTTTTCAG TATACGCGAATTCTGGAATGTTTTGTGATACTGCAAGAAAATTAAACAGAGCAAAAGATCCCAAGTTCCAAGTGAATCTAGGATCTCAGAGTGAAGTAAG GGAATCTTGTGAAGATAAATATCCTATCAAGACTATTACAGACAAGCTGTACAGGACTTCATCTCTACGGGGAATATCTGACCAATCAAAAAGTGAGTTT TTGATGTTAAATCTCGTAGTGGGTCAAATGCAAGTAACGGTGATTATATTTCCTTATCTTATTCCTTTAATCTCATTTGCCTGGTTCTTTCCCCTTCAAT ACAATGTTCTCTGTCGGTAGTTATAGCTGGGTACATAGTTAGCTAAAATTGGTGCCAGCAACTATTTGAATTTGTATTGGTTGAGTAAATGTTTTCCCCC TTTGATCCCAGCCTATATTTTGAGTTCATGCTACATGCTAATGTGCTCAGCTTTAACCATTTTTTTCTCTTTCATTCAGTATGATCTAATATTTGGGCCT TGCTTGTTAATCTGTTCAGATGTTATTGAAGTTCTCTATGGTGAAGTATGCCTCTGGTTTCTAACTTCTATCTCTTTTAGTAAATATACCCTTAGCCAAC ATTCATTAAAGATAAGCTCTTTTTACGATGATCAAGCAGATAATCTCACAAGTCGATTGTTAAACTTTGATTCTACTTTAGTAAAATAAAACGGCTGACG TCTCATGTATATGGTCATTCAAACAGAGATGTTATGTATACTTTTGACTTATTTATGAATTTCAGATGTTTACATGCAGTCTATTAGTCTATATATAAGA GAGACAAGGAGACAAACAGGGAAAAACCAATCTCTTACAATGAACAACTATTAAACACTGTCCTAACTAAGGAAATAAACAAACTAGCCTATTAATTAAA AAATATTTACAATTATTGTTGTCAGATATTGTCTCAAATATCAATTGATTGAGAGATATTGTGATCACACAATCAGAAATTTGTGATTCAAGTTCAGTCT TGAATTTCCAAGTAATTTTTTCATTATATTTAGTAAAGGACCTTACCTGCCATGTACTAGTTCATTCAAATTGCTTATTGTTTGTGATTCAAGCATTGTG TCCTTTTAGTTTACTAGTGATTTTCTCACTGTATTTCAGGTTATGAATCCTCTTTTTGCAATGAAGAAATCGGTCCAGTCAAACACACCAATGGAGTTGC TACCATACAAGGAAGGACCCGCTTGCTAGTTCAGAGGTTTGAAAGAGGGGAGGAACAAATTCAAATCGATGAAGATAAAATTAATTCTCATGTCCCAAAA ATAAGTGAAGAGAGGGAAAAAGTTCACGATGAAGATCAAATTTATGCATCCTCCACCACGGTATTTGAGAGGAGGGAAAAAATTCCCCGCAATGAAGATC AAAACAATATGCCTTCCATTCCCAACACAATATCTGAAACCTCCACCCTGGCATTTGAGAGGAGGGAAAGAATTCCCCGCGATGAAGATCGAAACAAAAT TTCGAGGGAAAGAACTCCTCCTAATGATGATCGTAACAATATGCCCTCCATTACAAGCACAATATCTGAAACCTCCACCATGGCATTTGAGAGGAGGGGG AAAATTCCCGTCAATGAAGATCGTAACAACATGCCAATGGAAAGAATTTCCCGTAATGAAGATCAAAACAATATGCCCTCCATTGCCAACACAGTATCTG AAACCTCCAGCACTGTATTTCGGAGGAGAGAAAGAATTCCCCGCAATGTAGATCAAAACAATATGCCCTCCATTGCCAACACAGTATCTGAAACCTCCAG CATGGTATTTCGGAGGAGAGAAAGAATTCTCCGCAATGAAGATCGAAACAATATTCCCCATATTCCCGGCACAATATCTGAATCGGATAAGTCTCCCTCC AAAGTGGTATATTCTAGCTCAGCTTTACAAGAGTTTAGATACTGGCATCTCCACTATAGCTTCTGTTCTTTTTTTAGCGAAAATTGTTTGTTATATGTAG GTTCATGTTAATTAAAAGCTCTACTTTATACATCCTAACGCTGCCCACATGCTGGAAGCTTAAGCTAAAAGCTTGTTACAGTAGGAAGCCAAGACCCGCT AACAAAATAGCGTGCAAAACTACTCTCTTTGATTAATGAACTTAAGCAACAACAAAGTTCCTTTTTGCATCCCAGTCAAATTGCAATTTAAGTGCTATCT GTTACCGGTATCCACTTGGAGCTTTTCTTAACAGATGAGTTATTGAAAAGTAACCGCTTAAGTTGGTCCAGAACCAGAAGAATTAAGTATCTTATTAAAA TAAAACTATTGCGATACTAAAACAGGCTCCAGAATTAAACGTGGTGTTATGATTTTAGGAATTAGCTTCTCAGATATTTTATTTGAACCTCTACATGAAG AAACCCCAGTCCTTGGGAAGTTTGGATTTTTTTATCAAGTGTTAGCTGACCCCACCAAGTGAGATTAAGAGTTGGTTTTTGTTGATGTTATTCCTCTTCT TCCTGTTTTTATATCCTCTTAATTTCGCCGTTTCTAGTCTTGTATAATGTTTAAAACCGTAAATGAAATATTATGCCTTGAAAGAATGGGAATGCTCAAA GTTACAAACTCAATCATGCCCTCTCTTTTTCTACCAACTGTTGCTTTGGGGTGGTTCAACTAATACATCTGCTCTGTTATATTATTTTCAGAAAGTTGAG CCTCGAATTCCTAGAGGGGATTTAGATTCTGCAAATGAAGGGCAAATAATTGAAGCACTGATGCAAACTCATGATGTAACATTAAGTACTCTTCGTTCAC GCATTACAAAGTTACAGGTGGTGCGGCATTTTTGGGAGCGCAGTGATATTAAAGGCGCCATTAAGGCTTTGAGAAAGCTACCAGATCATTCTGT BLAST |
| Tissue | pods |
| Gene name | LI_gene_159812; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_303036
| Blastp | Katanin p80 WD40 repeat-containing subunit B1 homolog from Arabidopsis with 71.82% of identity |
|---|---|
| Blastx | Katanin p80 WD40 repeat-containing subunit B1 homolog from Arabidopsis with 72.15% of identity |
| Eggnog | Katanin p80 (WD repeat containing) subunit B 1(ENOG410XQAC) |
| Kegg | Link to kegg annotations (AT5G23430) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019426191.1) |
| Pfam | WD domain, G-beta repeat (PF00400.31) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |