| Id Trinity | TRINITY_DN48292_c0_g2_i2 |
|---|---|
| Name Transcript | Ll_transcript_302379 |
| Sequence | CCCAGTACTAGGTTTCCTTGCTCTCTACCACCTCGCTCCCAATTCCCAAATCTATTTTCCCGCCAAAACAAAAACCCTCGAAATTGCGAGAAATTCAGCA TCAATGGTGAAAGACGAGGAAGAGATGAGAGGTGAAATCGAAGAGAGGCTGATAAACGAGGAATACAAGATATGGAAGAAGAACACTCCATTCCTCTACG ATCTCGTGATCACCCACGCTCTCGAATGGCCTTCGCTCACCGTCGAGTGGCTCCCGGACCGTGAGGAGCCTCCAGGGAAGGACTATTCCGTCCAGAAGAT GATCCTTGGGACCCACACCTCTGAGAATGAGCCCAATTACTTGATGCTTGCCCAGGTTCAGCTCCCTCTCGATGACGCCGAGAATGATGCTCGCCATTAC GAGGATGATCGTACCGATGTTGGTGGCTTTGGTTGCGCCAATGCCAAGGTGCAAGTAATCCAGCAAATAAACCATGATGGGGAGGTTAATAGGGCTCGTT ATATGCCTCAGAACCCATTTATCATTGCTACAAAGACTGTTAGTGCTGAAGTTTATGTCTTTGACTATAGCAAGCATCCATCAAAGCCTCCTCTAGATGG TGCATGTAATCCTGATTTAAGGTTAAAAGGTCACAATACTGAAGGATATGGCTTATCGTGGAGCAACTTCAAGCCGGGCCATTTATTGAGTGGCTCTGAT GATGCTCAGATATGCTTGTGGGATATCAATTCAAATGGAAAAAATAAAAGTCTGGAGGCTACACAAATCTTTAAGGTCCATGAAGGTGTTGTAGAAGATG TAGCATGGCATTTGAGGCATGAGTACTTGTTTGGCTCTGTTGGTGATGATCAATACTTGCTCATATGGGATCTTCGATCACCATCAGCCTCCAAGCCTGT TCAATCTGTGGTTGCTCATCAAAGTGAGGTTAACTGCTTGGCTTTCAATCCCTTTAACGAATGGATTATTGCCACTGGTTCTACTGATAAAACTGTGAAG TTGTTTGATCTGCGGAAGATCAGTGCTCCTCTTCACACCTTCGATTGTCACAAGGAGGAGGTTTTCCAGGTGGGTTGGAATCCAAAGAATGAGACTATCT TGGCTTCTTGTTGTCTAGGCAGAAGACTCATGGTGTGGGATCTTAGCAGGATTGATGAAGAGCAGCCACCAGAAGATGCCGAAGATGGTCCACCCGAATT GCTCTTCATTCATGGCGGTCATACGAGTAAAATATCTGACTTCTCTTGGAACCCATGTGAAGATTGGGTTGTTGCTAGTGTTGCTGAAGACAACATACTT CAAATATGGCAGATGGCAGAGAACATATACCATGATGAAGATGATTTGCCAGAAGAGTCAACAAAGGCCTCTTAATGTAATTGCTCATCATGTTAGTATA TGTTTAGTATGGATCATAAGCTTTACTCTTTCAACTCTTACATACTTGTGTTCATCTTGTTCTGTCTTTTTTATTTATCTAAGTTGAACTTGTTGCTATC TTTTAACCTTATCAACTATATATATGTTTGCCTTCATCACTTTCTGGAGGTACATGCTGCATGTAACCTTTGATGATAAGGTTTCTCATAAAAGTACTAT TAAATAAAGATCCACAAACATCACCTACAGTCCATTTTTATCAGTAGCTGTGTATCAAAACTTGTTAAGAAAATTGACCTTCAAATACTAATAAGGTCTT GATTTAGTAGTGTAAGGCTTTGTTAGATTCCCAGAAAGATCAAAAGGTCAAGGTTTGATTTCTGGGAATGATACTTGTTCCGAGG BLAST |
| Tissue | pods |
| Gene name | LI_gene_159816; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_302379
| Blastp | WD-40 repeat-containing protein MSI1 from Lycopersicon with 92.07% of identity |
|---|---|
| Blastx | WD-40 repeat-containing protein MSI1 from Lycopersicon with 92.07% of identity |
| Eggnog | retinoblastoma binding protein(ENOG410XNU9) |
| Kegg | Link to kegg annotations (543534) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019433779.1) |
| Pfam | Histone-binding protein RBBP4 or subunit C of CAF1 complex (PF12265.7) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |