| Id Trinity | TRINITY_DN48301_c1_g1_i11 |
|---|---|
| Name Transcript | Ll_transcript_438757 |
| Sequence | GGGAGATATTTCACACCAAAAAAGGAGATGACTTGTTATCTACAAGATAAAAAAATTGAAACGAAAGAAGGGTCAAAATCCAAGTAAGTCTAAGTCTAAC TCGGGTGTGGTGCTGGGCTCACACAAGACGAAGACGAAAGAAGAGTAAGGTTCGTTGGATTAGCGTGTTTGTGTGAGTGGTTCACGTACTCTCTAACCTC TCCTTCTTCTCCTTTTTATCTTCATTCTCACTCACTCATTATCTATTCTCCACAAACACAAACTTCTTCTCCTCTCTCTCTCTCTCTCCTTCTCTCTCTG TGCGATGGCACTGTATTCGGTGTCTTCTCTTTCTCAGCTTCTTCGCGCCAATGCTCTCTCTCCGTCGCAACCGTTTCCGATGATTCTTAACGGTCACTTG ATCGTTGACTTCGCTGGTCACTCTTCCAAACCAAAACGACGCAACCGGAGACTCTCCTCTTCGCCGCCGCCGCCGCCGTTTCATTCTCCGAGGTCACGAT TCCGTCGTTCATCGCTCAAAGCTGTTCTCGAACTTAACCGATGCAGCAGCAACATCAACGCTTCTGATGCTTCATCTGATTTAAAGCCAAAGGTTGCGAA CTTGGAGGACATACTATCAGAAAGAGGAGCCTGTGGTGTTGGATTCATTGCCAATTTGGAAAATAAAGCATCCCATGAGATTGTCAAGGATGCTCTAAAT GCTTTAAGCTGTATGGAACATCGTGGAGGCTGTGGAGCTGATAATGACTCTGGTGATGGTTCAGGGCTAATGACTGCAATTCCATGGGATCTATTTGACA ATTGGGCCAGCAAGCAAGGGATTGCTTCCTTTGATAAGTTACACACTGGTGTTGGAATGGTTTTCCTACCCAAAGATGTTGAACTTCTGAATGAGGCTAA GAAAGTTGTTGTAAATATCTTTCGGCAAGAAGGTCTTGAGGTGCTTGGGTGGAGGCCTGTCCCTGTAAATGCTCCTGTAGTAGGTTATAATGCGAAGGAG ACCATGCCCAACATACAGCAGGTATTTGTTAAGATCTTGAAAGAAGAAAATGTCGATGACATCGAGCGAGAATTGTACATCTGTCGGAAATTAATTGAAA AAGCAGTAACCTCAGAAAGTTGGGGAAATGAGCTTTATTTCTGTTCTTTATCTAATCAAACCATAGTTTACAAGGGGATGCTTCGCTCAGAAGTTCTTGG GTTATTTTATTCTGACCTTCAAAATGATCTCTATAAGTCCCCTTTTGCCATTTATCATCGAAGATATAGCACAAATACTAGTCCCAGGTGGCCTCTTGCA CAGCCAATGAGACTTCTTGGCCATAATGGAGAAATCAACACTATACAGGGGAACTTGAATTGGATGCAATCACGAGAGCCATCATTGAAGTCTCCTGTAT GGCGGAATCGTGAAAATGAAATTCGTCCATATGGAAATCCAAAGGCATCAGACTCGGCAAACCTTGATAGTGCTGCAGAATTATTGATAAGAAGTGGTCG TAATCCTGAGGAAGCTATGATGATTCTTGTTCCAGAGGCTTACAATAATCACCCAACTCTGACAAACAGCTACCCCGAGGGAGAATATCAGAAGGTGGCT GGGTGCAGAAAGGGGCACCAACACAACTACTGACTGGAATGTTGGTAATTCTTATGTCACCCGCAAAGTCATGGACAGTACGTGTCATACATGTGGTTGA CTTCTATGACTACTACAAGGGTCAGATGGAGGCTTGGGATGGACCAGCATTGCTGTTATTCAGTGATGGAAAAACTCTCGGTGCATGTCTTGATCGGAAT GGACTGAGACCTGCTAGGTACTGGCGTACATCAGACAATATGGTCTATGTTGCCTCTGAGGTTGGTGTTGTGCCAGTGGATGACTCGAAGGTTATCTCAA AAGGCCGATTAGGTCCAGGCATGATGATTACTGTTGATTTACTTGGTGGTCAGGTGTATGAGAATACAGAGGTTAAAAAGCGAGTAGCCTTATCAAATCC ATATGGGAACTGGATCAAGGAAAATCTGCGGTCTTTGAAACCTGCGAACTTTCTTTCAGCAGCTGTGATGGAAAACGATGCAGTATTAAGACACCAACAG GCATTTGGGTACTCTAGTGAAGATGTCCAGATGGTGATTGAGAGTATGGCTGCTCAAGGAAAGGAGCCCACATTTTGCATGGGAGATGATATTCCACTGG CAGCGTTGTCTCAGAAGCCTCACATGCTTTTCGATTATTTTAAGCAACGCTTTGCACAGGTTACAAACCCTGCTATTGATCCTCTTCGTGAAGGATTGGT TATGTCTCTTGAAGTCAACATTGGGAAACGGGGGAATATATTGGAAGTTGGACCAGAGAATGCTTCACAGGTTATATTGTCTAGTCCAGTATTGAATGAA GGGGATCTTGAGTCATTACTAAAGGACACACACTTAAACCCACAAGTATTGCCTACATTTTTTGATATATCTAAGGGGGTTGATGGTTCCTTGGAAAAAG CATTAAGTAAGCTTTGTGAAGCTGCAGATGAAGCTGTTAGAAATGGTTCCCAGTTGCTTGTTCTTTCAGACCGTTCAGATGAACTGCAACCAACACATCC TGCAATTCCTATACTTCTTGCTGTTGGTACTGTTCATCAGCATCTAATTGAGAATGGCCTGAGGACGTCAGCTTCAATTTTAGCTGATACTGCTCATTGC TTTAGCACTCATCAGTTTGCATGTTTGATAGGATATGGTGCAAGTGCTGTTTGTCCATACTTGGCATTGGAGACATGCCGGCAGTGGCGATTGAGTAACA AAACTGTAAATCTGATGAGGAATGGAAAGATGCCTACTGTATCAATTGAGCAAGCACAGAAAAACTATTCCAAGGCTGTAAAAGCAGGTCTTCTTAAAAT TCTTTCCAAAATGGGCATCTCATTACTTTCAAGGTATGTGAAGAACAACTACTGCCAGAGTATGCTTACATGACCAGTTGTAAATAGATTAGGAGTTTCT CTTATGTTTGAATTGTTTCTCTAGAAAAAAGAAAAACATTTCCTTAATTACTATGTTTTTGACGAATCAATTTGTCAATTCCTTGTATATAGTTACTGTG GTGCACAGATATTTGAAGTTTATGGGTTGGGGAAGGAAGTTGTCGATGTTGCATTCAGAGGAAGTGTGTCAAAAATTGGTGGATTAACTTTTGATGAGCT GGCAAGAGAGACCCTGTCTTTCTGGGTGAAAGCATTCAGTGAAGATACTGCTAAAAGATTGGAAAATTTTGGATTTATACAGTTCAGACCTGGGGGGGAG TATCATGCAAATAATCCTGAGCTGTCAAAGTTGCTCCATAAAGCTGTTCGTCAAAAAAGTCAAAGTGCCTTTTCAGTTTATCAGCAGCATTTGGCTAACC GACCTGTTAATGTTCTTCGTGATCTTGTTGAGTTTAAAAGTGATCGTTCTCCAATACCTGTGGGGAAGGTTGAACCTGCTTCATCTATTGTTCAAAGGTT TTGCACTGGCGGGATGTCACTTGGAGCTATTTCGAGAGAAACTCATGAAGCAATTGCAATTGCAATGAACAGATTAGGTGGAAAATCAAATTCAGGGGAA GGTGGTGAGGATCCTATTCGCTGGAAACCACTTTCAGATGTTGTTGATGGTTACTCTCCAACTCTTCCTCATCTTAAAGGTCTTCAAAATGGGGATACTG CTACCAGTGCTATCAAGCAGGTTGCTTCTGGAAGGTTTGGTGTCACCCCAACATTCTTGGCAAATGCTGATCAAATTGAAATAAAAATTGCACAAGGTGC AAAGCCTGGTGAAGGTGGACAATTGCCTGGGAAAAAAGTTAGCATGTATATTGCACGGTTGAGAAATTCTAAGCCTGGGGTTCCTCTTATATCTCCACCT CCTCATCATGACATTTATTCTATTGAGGATCTTGCTCAACTGATATTTGATCTTCATCAGGTAAACCCTAGGGCCAAGGTGTCAGTAAAACTGGTTGCTG AAGCTGGAATTGGCACTATTGCATCTGGGGTTGCTAAGGGAAATGCTGACATTATACAGATTTCAGGGCATGATGGTGGAACGGGAGCAAGCCCTATAAG TTCCATCAAGCATGCAGGAGGTCCTTGGGAACTTGGACTTACAGAATCTCACCAGACACTAATAGAAAATGGACTTAGAGAAAGGGTCATTCTCAGAGTT GATGGTGGCTTTAAAAGTGGAGTTGATGTCATGATGGCAGCAATAATGGGTGCTGATGAATATGGGTTTGGGTCAATGGCAATGATTGCTACTGGGTGTG TTATGGCCCGCATTTGCCACACCAATAATTGCCCAGTTGGAGTTGCCAGTCAGAGGGAAGAGTTGCGTGCACGCTTTCCTGGTGTTCCTGGAGATCTCGT CAACTTCTTTTTATATGTTGCTGAGGAGGTAAGAGGCATATTGGCACAACTGGGGTATGAGAAATTGGATGATATAATTGGCCGGACAGACTTGTTGCGA CCAAGAGACATCTCTCTACTGAAAACTCAGCACCTAGATCTAAGTTATCTCCTCAGTAATGTTGGGTTGCCTAAATGGAGTAGTTCAACAATCAGGAATC AAGAGCCTCATACCAATGGTCCTGTTCTTGATGATGTTTTGCTAGCAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_159872; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_438757
| Blastp | Ferredoxin-dependent glutamate synthase, chloroplastic from Spinacia with 91.01% of identity |
|---|---|
| Blastx | Ferredoxin-dependent glutamate synthase 1, chloroplastic/mitochondrial from Arabidopsis with 82.18% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019437056.1) |
| Pfam | Conserved region in glutamate synthase (PF01645.16) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |