| Id Trinity | TRINITY_DN48301_c1_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_438748 |
| Sequence | GGGAGATATTTCACACCAAAAAAGGAGATGACTTGTTATCTACAAGATAAAAAAATTGAAACGAAAGAAGGGTCAAAATCCAAGTAAGTCTAAGTCTAAC TCGGGTGTGGTGCTGGGCTCACACAAGACGAAGACGAAAGAAGAGTAAGGTTCGTTGGATTAGCGTGTTTGTGTGAGTGGTTCACGTACTCTCTAACCTC TCCTTCTTCTCCTTTTTATCTTCATTCTCACTCACTCATTATCTATTCTCCACAAACACAAACTTCTTCTCCTCTCTCTCTCTCTCTCCTTCTCTCTCTG TGCGATGGCACTGTATTCGGTGTCTTCTCTTTCTCAGCTTCTTCGCGCCAATGCTCTCTCTCCGTCGCAACCGTTTCCGATGATTCTTAACGGTCACTTG ATCGTTGACTTCGCTGGTCACTCTTCCAAACCAAAACGACGCAACCGGAGACTCTCCTCTTCGCCGCCGCCGCCGCCGTTTCATTCTCCGAGGTCACGAT TCCGTCGTTCATCGCTCAAAGCTGTTCTCGAACTTAACCGATGCAGCAGCAACATCAACGCTTCTGATGCTTCATCTGATTTAAAGCCAAAGGTGAGCAA GTAATGGGGAACGGAGAAAGTGGACGAAGGATTTATGAGAGAATTGTAGTGAGGTTGCGAACTTGGAGGACATACTATCAGAAAGAGGAGCCTGTGGTGT TGGATTCATTGCCAATTTGGAAAATAAAGCATCCCATGAGATTGTCAAGGATGCTCTAAATGCTTTAAGCTGTATGGAACATCGTGGAGGCTGTGGAGCT GATAATGACTCTGGTGATGGTTCAGGGCTAATGACTGCAATTCCATGGGATCTATTTGACAATTGGGCCAGCAAGCAAGGGATTGCTTCCTTTGATAAGT TACACACTGGTGTTGGAATGGTTTTCCTACCCAAAGATGTTGAACTTCTGAATGAGGCTAAGAAAGTTGTTGTAAATATCTTTCGGCAAGAAGGTCTTGA GGTGCTTGGGTGGAGGCCTGTCCCTGTAAATGCTCCTGTAGTAGGTTATAATGCGAAGGAGACCATGCCCAACATACAGCAGGTATTTGTTAAGATCTTG AAAGAAGAAAATGTCGATGACATCGAGCGAGAATTGTACATCTGTCGGAAATTAATTGAAAAAGCAGTAACCTCAGAAAGTTGGGGAAATGAGCTTTATT TCTGTTCTTTATCTAATCAAACCATAGTTTACAAGGGGATGCTTCGCTCAGAAGTTCTTGGGTTATTTTATTCTGACCTTCAAAATGATCTCTATAAGTC CCCTTTTGCCATTTATCATCGAAGATATAGCACAAATACTAGTCCCAGGTGGCCTCTTGCACAGCCAATGAGACTTCTTGGCCATAATGGAGAAATCAAC ACTATACAGGGGAACTTGAATTGGATGCAATCACGAGAGCCATCATTGAAGTCTCCTGTATGGCGGAATCGTGAAAATGAAATTCGTCCATATGGAAATC CAAAGGCATCAGACTCGGCAAACCTTGATAGTGCTGCAGAATTATTGATAAGAAGTGGTCGTAATCCTGAGGAAGCTATGATGATTCTTGTTCCAGAGGC TTACAATAATCACCCAACTCTGACAAACAGCTACCCCGAGGTGGTTGACTTCTATGACTACTACAAGGGTCAGATGGAGGCTTGGGATGGACCAGCATTG CTGTTATTCAGTGATGGAAAAACTCTCGGTGCATGTCTTGATCGGAATGGACTGAGACCTGCTAGGTACTGGCGTACATCAGACAATATGGTCTATGTTG CCTCTGAGGTTGGTGTTGTGCCAGTGGATGACTCGAAGGTTATCTCAAAAGGCCGATTAGGTCCAGGCATGATGATTACTGTTGATTTACTTGGTGGTCA GGTGTATGAGAATACAGAGGTTAAAAAGCGAGTAGCCTTATCAAATCCATATGGGAACTGGATCAAGGAAAATCTGCGGTCTTTGAAACCTGCGAACTTT CTTTCAGCAGCTGTGATGGAAAACGATGCAGTATTAAGACACCAACAGGCATTTGGGTACTCTAGTGAAGATGTCCAGATGGTGATTGAGAGTATGGCTG CTCAAGGAAAGGAGCCCACATTTTGCATGGGAGATGATATTCCACTGGCAGCGTTGTCTCAGAAGCCTCACATGCTTTTCGATTATTTTAAGCAACGCTT TGCACAGGTGAGCTAGAGTATTTTCTGACAAATTATTCTATTAAGTAAATTCTTTTGTTAACTGTAACTAAATTTTGATGCAATGGATTTGTATTGCAAA GGCACTATGACAATGTTTTACTATATATTATTGCTGTTTACTGTGCCATAAGATACATGATACTGCTGTCTGTATATGGTATTCATTATATGCCTCTCAT TAAACTCTGCATATCTCTATCCTTTTGTGTATCTATCTGTGGATTCGTGCATGTAAGGTTCATTTCTTTTCCAGATGAGCTAAGATATCATTAAGCTTTC TTACTATCATGTACTTTTTCCCTCTTGTTTCCCTTCTACATGGGTTTTAGAAGGGGACCCTGTCCTCTTGTTCCCTTTTTGGGGGTGGGGGGTTGAGGGA CAGAGAAGAATCTGTTCAGATGCAAGATGGACTTTTTTCGTCACTCGATGTGGAATATTTAATTGTTGATCTTGTTGAAGCCTGAAGGTTATTATGACCT TGAATAATCGGGATGATTGGTTCACAAACAAAATCTGTACTCTTCATAAACCAAGAAAGAGTTCAAATGAGTAAGCATGGTTCACTCAATCTGTTGGAAA ATATGTTTTTCTCATGCATTTGTTGGTGTTACTTCCATTCCAGTTTAACATCGGAGACTCACAAAATGGCACAACTGAGGATTTAGTACTTACTCTACAG ATCCATATTTTTAAATTATTCTAGTTTTCTAAGCTTTTATTTGACATGCACTATTCTTAACTGATATGTACCCACCATATCTCTTTATAATGCTCTTCAG TTTAATTTCCTATGTGACTACCCCAGTTTTATTCATTTTTCGAAGTACAGGTTACAAACCCTGCTATTGATCCTCTTCGTGAAGGATTGGTTATGTCTCT TGAAGTCAACATTGGGAAACGGGGGAATATATTGGAAGTTGGACCAGAGAATGCTTCACAGGTTATATTGTCTAGTCCAGTATTGAATGAAGGGGATCTT GAGTCATTACTAAAGGACACACACTTAAACCCACAAGTATTGCCTACATTTTTTGATATATCTAAGGGGGTTGATGGTTCCTTGGAAAAAGCATTAAGTA AGCTTTGTGAAGCTGCAGATGAAGCTGTTAGAAATGGTTCCCAGTTGCTTGTTCTTTCAGACCGTTCAGATGAACTGCAACCAACACATCCTGCAATTCC TATACTTCTTGCTGTTGGTACTGTTCATCAGCATCTAATTGAGAATGGCCTGAGGACGTCAGCTTCAATTTTAGCTGATACTGCTCATTGCTTTAGCACT CATCAGTTTGCATGTTTGATAGGATATGGTGCAAGTGCTGTTTGTCCATACTTGGCATTGGAGACATGCCGGCAGTGGCGATTGAGTAACAAAACTGTAA ATCTGATGAGGAATGGAAAGATGCCTACTGTATCAATTGAGCAAGCACAGAAAAACTATTCCAAGGCTGTAAAAGCAGGTCTTCTTAAAATTCTTTCCAA AATGGGCATCTCATTACTTTCAAGTTACTGTGGTGCACAGATATTTGAAGTTTATGGGTTGGGGAAGGAAGTTGTCGATGTTGCATTCAGAGGAAGTGTG TCAAAAATTGGTGGATTAACTTTTGATGAGCTGGCAAGAGAGACCCTGTCTTTCTGGGTGAAAGCATTCAGTGAAGATACTGCTAAAAGATTGGAAAATT TTGGATTTATACAGTTCAGACCTGGGGGGGAGTATCATGCAAATAATCCTGAGCTGTCAAAGTTGCTCCATAAAGCTGTTCGTCAAAAAAGTCAAAGTGC CTTTTCAGTTTATCAGCAGCATTTGGCTAACCGACCTGTTAATGTTCTTCGTGATCTTGTTGAGTTTAAAAGTGATCGTTCTCCAATACCTGTGGGGAAG GTTGAACCTGCTTCATCTATTGTTCAAAGGTTTTGCACTGGCGGGATGTCACTTGGAGCTATTTCGAGAGAAACTCATGAAGCAATTGCAATTGCAATGA ACAGATTAGGTGGAAAATCAAATTCAGGGGAAGGTGGTGAGGATCCTATTCGCTGGAAACCACTTTCAGATGTTGTTGATGGTTACTCTCCAACTCTTCC TCATCTTAAAGGTCTTCAAAATGGGGATACTGCTACCAGTGCTATCAAGCAGGTTGCTTCTGGAAGGTTTGGTGTCACCCCAACATTCTTGGCAAATGCT GATCAAATTGAAATAAAAATTGCACAAGGTGCAAAGCCTGGTGAAGGTGGACAATTGCCTGGGAAAAAAGTTAGCATGTATATTGCACGGTTGAGAAATT CTAAGCCTGGGGTTCCTCTTATATCTCCACCTCCTCATCATGACATTTATTCTATTGAGGATCTTGCTCAACTGATATTTGATCTTCATCAGGTAAACCC TAGGGCCAAGGTGTCAGTAAAACTGGTTGCTGAAGCTGGAATTGGCACTATTGCATCTGGGGTTGCTAAGGGAAATGCTGACATTATACAGATTTCAGGG CATGATGGTGGAACGGGAGCAAGCCCTATAAGTTCCATCAAGCATGCAGGAGGTCCTTGGGAACTTGGACTTACAGAATCTCACCAGACACTAATAGAAA ATGGACTTAGAGAAAGGGTCATTCTCAGAGTTGATGGTGGCTTTAAAAGTGGAGTTGATGTCATGATGGCAGCAATAATGGGTGCTGATGAATATGGGTT TGGGTCAATGGCAATGATTGCTACTGGGTGTGTTATGGCCCGCATTTGCCACACCAATAATTGCCCAGTTGGAGTTGCCAGTCAGAGGGAAGAGTTGCGT GCACGCTTTCCTGGTGTTCCTGGAGATCTCGTCAACTTCTTTTTATATGTTGCTGAGGAGGTAAGAGGCATATTGGCACAACTGGGGTATGAGAAATTGG ATGATATAATTGGCCGGACAGACTTGTTGCGACCAAGAGACATCTCTCTACTGAAAACTCAGCACCTAGATCTAAGTTATCTCCTCAGTAATGTTGGGTT GCCTAAATGGAGTAGTTCAACAATCAGGAATCAAGAGCCTCATACCAATGGTCCTGTTCTTGATGATGTTTTGCTAGCAGATCCAGAGATTGCAGATGCC ATTGAAAATGAAAAAGCGGTTAGTAAGACTACAAAAATATACAACATCGATCGTGCTGTTTGTGGGCGTATAGCTGGCGTCATTGCAAAGAAGTATGGCG ACACTGGTTTTGCTGGACAGTTGAATCTAACATTTACAGGAAGTGCTGGGCAGTCATTTGCATGCTTTTTAACACCTGGAATGAACATACGACTTGTTGG AGAGGCTAATGACTATGTGGGCAAGGGCCTTGCTGGAGGTGAGTTGGTTGTCACTCCAGTTGAAAAGACGGGATTTCGACCCGAGGATGCAACTATTGTG GGGAACACTTGCTTGTATGGAGCAACAGGTGGACAAGTCTTTGTTAAAGGGAAAGCTGGGGAGAGATTTGCTGTGAGAAACTCACTTGCCGAAGCTGTGG TTGAAGGCACAGGAGATCATTGTTTGGAATACATGACTGGTGGCTGTGTGGTTATCCTGGGAAAAGTGGGTAGAAATGTAGCTGCTGGAATGACTGGAGG GTTGGCTTACATTCTTGACGAGGACAATACTCTTATACCCAAGGTAAACAGAGAAATTGTAAAAATCCAACGAGTGTCAGCACCTGTGGGGCAGATACAG CTGAAGAGCCTAATTGAAGCCCATGTTGAAAAAACGGGAAGTAACAAAGGTGCAGCTATTCTGAAGGACTGGGAAGAGTACTTGCCACTATTTTGGCAGC TGGTTCCACCTAGCGAAGAAGACACTCCTGAAGCTAATCCCAAGTACGACACAACTACTGCAGAACAGGTCACTTTTCAGTCTGCTTAGGATAATAATAC GAGCCTCGATTACGCCAGGCCTTGGAGCCATTGTTGTGTCCTTGCTTTGTACAGGAATTGAAGAAGGTATATGATTAGGGTGGAGATGCTAACCAAAATA TGGGATATACTAATTATCCCATGTAACCAAAGGGATGCATCCATTCTGAAGGTCGTATTTGCCATTAGTTCCAAGCAACCCTTGTACATCCCATTTGAAG CATTAGCCTTCCCTTCACTTCAAAACTTCAGTATAGGACTATAGGCATTTGAAAGAAAAACTCTAAATAAAATGCTGTTCATGTGAATCTGTTTTGAAAG TTTGTGGATGGTGAAAATAAATTACTGGATTCATATGTCTGATCATCTCTCATCTGTCTGATCAAATGAAAAATTAATGTTTTTCACATGCACTGTTGAA ATACTTTAAATAACTTGTCATGATTTTTATTTTCTTTTTTTGCGTATGTTTTATTGTTACTCCTG BLAST |
| Tissue | pods |
| Gene name | LI_gene_159872; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_438748
| Blastp | Ferredoxin-dependent glutamate synthase, chloroplastic from Spinacia with 87.27% of identity |
|---|---|
| Blastx | Ferredoxin-dependent glutamate synthase, chloroplastic from Spinacia with 86.8% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019437056.1) |
| Pfam | Glutamate synthase central domain (PF04898.13) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |