Id Trinity | TRINITY_DN48314_c1_g4_i5 |
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Name Transcript | Ll_transcript_440256 |
Sequence | CCGATCCGTGCCACTCTTTTCCCTGGAGATGGTATTGGCCCCGAGATCTCCGAATCCGTTAAACAGGTTTCGTTTTTTCATTTTCTCGCTTTTCGATTTA TCTGTGCGGATAAGACTGCGTACATCTACCTCCCCGTATTCTGGGAGCTCATGCAATGAGCCGTGCTTTTTTAATTGGTTGTTTTCTTTTTTGTCTGATC TTAGTGTATATGTAACTTTATCAGCTGAATATGTTTTCTGAATGTTAAAAATATGTAGAAAATGATGCATCCTCTTATTCTTTTAAAAATAGCTTGTACT TTCAATATCAAATAGTGTTGCTTTAAAAAACTAAGGTAAATGGACATGCTTAATTTGATTCGAAAGTTGGAAAAAAATGGGACCTATTTATCAGTTCATA ATTTTCATGGAAATAGATAATTATATGTGATGTCAAGTATTTAGCATGTCTTGTGTTCATCCATTTGAGAGGAGCTACAGTTCCCTTCAGTCTGTATGGT AAATTGCGTTCACGGTTGCGGTTATGCCACGATTATCACAATTGCGTGAAAACACAGTCCTGGTTCCAGTTGCATAATTGTGCGGAAACTCCAACAAGGC TGCAACAGTAATATTGCAACCGCAATTTGAAACCATTTGGTTTTTTTCTATGTTAATAGAAAGGTGTAGCAGCATAGCTATGTCTTGTGTAATGTGCTGG TGTTGGCATGTATTGGTTGTGGATCAATCTGATTGAACATCTAAACTTTAAAAATGGGTATGGGTTGTTTATTTTGTTTGGCCTATGTAATTGCCGATGA AAAACTTTTTCATTAGAGTTGACGAATATATTAATAACTCAAGTTTTATCATTTTTTGGGGCTGTTTGTTCTCCAGTGATGTAAGCTATACTTGAAATAG CTCTTGTATAATATCTATCGTTTTGGATAGACAGAAAGTGTGTGGTGAATTAGGAAATAGTAAAAACTTGATCTGTTGTTTAGTTGTATTTTCCAAACTG TGTGTTAGTTTTTATTACTACAGACAAACACAGACATATTTGTTTTACTAAAAAAAGTGTGAGTACTTAGAAATTGATGCGCCGGGATGCATTTTTCTGA AGTTGAAATGAGTGACATTTGCAATTGATTTAATTTAATATTATTTATTTCTCTTATAAAACTTAATTTATTTTGTGCTAGGTAAAAAATGTTGTTTTCT TAGGATATTCTTTGTTTGAATGCATCGGCAAGGGGGCTCAATGAAGCCCTTGTTCCCAATAACTTCAAGTGCTTGCTTTGTCTATCTCTTGGTTTCTACT TGTTTCTTTATATTAAGAGTATATTGGCTTGTTTTACAGTACTTTTACTTTTTCTACTTTGCCATGGCTGTATAATCTATTTGTGCTCTCCATTTCGTTG TTGCCGAAACTGATCAAATTTGCTATACCGTATTCTTCCTCATCTTTCTTTGCTATATATGTTTCTTGACTTCTTTTTATGTATACTCTAAAATTCATAG AGATTTACTGTTATTGTTGCATCAAAATTTAACACTTTCTCAATTATTACTATTACAATAATTAGATATTCCAAGCAGCTGAAGTGCCAATAGAATGGGA AGAGCATTATGTAGGGACAGAAATTGACCCTAGAACACAGAGCTTTCTAACATGGGAAAGTTTGGAATCAGTAAGGCGCAACAAGGTTGGCTTGAAAGGG CCAATGGCCACCCCTATTGGAAAAGGGCATCGTTCTTTAAACCTTACTCTAAGAAAAGAACTTAGTTTGTATGCCAATGTTCGACCGTGCTACAGCCTTC CTGGCTACAAAACTCGGTATGATAATGTGAATCTCATCACGATCCGTGAAAATACCGAAGGGGAGTACAGTGGACTTGAACATCAGGTTGTGAGAGGTGT AGTAGAAAGTCTCAAAATCATTACTCGTCATGCAAGTTTAAGGGTGGCTGAGTATGCCTTTCACTATGCCAAGGTACACGGGAGAGAGAGGGTATCTGCT ATCCACAAAGCAAACATTATGCAAAAGACTGATGGACTTTTCCTCAAGTGTTGCCGTGAGGTTGCAGAGAAGTATCCTGAGATAAAATATGAGGAAGTTG TCATTGACAATTGCTGCATGATGCTTGTGAAGAATCCTGCACTTTTTGATGTATTGGTGATGCCTAACCTTTATGGTGATATTATCAGTGACCTCTGTGC TGGCTTGATTGGGGGTTTGGGCTTGACACCAAGCTGCAACATTGGTGAGGGAGGTATTGCACTTGCTGAGGCTGTACACGGTTCAGCGCCTGATATTGCT GGAAAGAATTTGGCAAATCCAACTGCTTTGCTGCTTAGTGGTGTTACAATGTTGCGCCATTTGGATCTCCATGACAAAGCAGACCGAATTCAAAATGCCA TCCTCAATACAATTGCTGAAGGGAAGTACCGAACTGCTGATCTTGGTGGCAGTTCAAAGACAACCGAATTTACTGCAGCAATTATTGATCATCTTTAAAT TTTGCTTTGGAGTTAGCAAGAATTTGTTGCTTATGATTTTGTTCAGTTAATTTCCTATTTTTCCCCACTTTTTCCAGAGGAGTAAGATTACCTCAGCTTA ATGGAAAATTCATATAAGTTTGTTGACCCTGCAACGAAATACAAGTAATGTTCAAGCATTCAAGTATTCACTGCCCAATGCAGTTTTAGGGCATTGTGAG GGGATGGAGTCTTTACACTTGAAAATGCTTCTTCATGGATAACCCTCAATAGTCCATTTTAGTATTCTTTGTTGGTAATATTAGCTAAATAAAAGTAACT TCTGATGTTTCATTTTTTCATCATTAATGCCTTTGGTGACTTGTTCAGATTGCATGCTTAATTTAGTTTTAAAAATGTGTTTAACTTGTGTTCTGACTAA GAATTGTTAAGGGACTAAAATAGTTCAAACATGCCATTCACGG BLAST |
Tissue | pods |
Gene name | LI_gene_159966; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_440256
Blastp | Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial from Arabidopsis with 90.91% of identity |
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Blastx | Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial from Arabidopsis with 90.97% of identity |
Eggnog | 3-isopropylmalate dehydrogenase activity(COG0473) |
Kegg | Link to kegg annotations (AT5G03290) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019435274.1) |
Pfam | Isocitrate/isopropylmalate dehydrogenase (PF00180.19) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |