Ll_transcript_440519

• Id Trinity: TRINITY_DN48322_c4_g1_i1
• Name Transcript: Ll_transcript_440519
• Sequence: CAACCTTGAGTTGAAATTAGGTTTGAGATGGATATATATATATATATATATATATACTGGCTTTTTAATACTTTGAATGCATTTTCCTAGAAGTTCTTAT TTGTATCTCTTTTTTTACTGATAGATATTTTGTATTTTATGAATATATCTCTTTGGCATGATAACATCTTAATATGCAGTTACACACTTTTTAATATTAT GTTTCTTTATATTTTTCGTAGACTGATAATGTTTTACCAAGCTTGGAAGAACAAGGAGTGCGCCAACTCTATCCTAAGGGGCCTAATGTTGATTACAAAA AAGAGCTGAGATCCCTGGTTGGAGAATTGCTGCTACATCTTTTGGAGCTGGCCGATATTCTTATTCAGAGACCATCTCAGTTTGCAAGGAGAGTTGAGGA AATTTCAACTGTATTCAAAAACATGCATCACCTTTTGAATTCAATGCGTCCTCATCAGGCGAGGGCAACACTAATTCACATCATGGAGCTTCAGATACAG CGCCGCAAAGAAGCAGTGGAGGATATAAAAAGGAGGAGAGGAGAATCACAAAAACTCCTTAATGAGTCTTTGGCAGCACTTGATGGCAATTAGAGCATTC TCTATCTTGCACTAAAAGTATGATTCTAATGAGCAAACTAATCTTATGCAAGAAATGAAGTTTGAGCATTAGATTTGTATAAAAAGGTCAAGATTAAAAC ACTAAGTTATGTTCCTATTTAAGGTGGCCATGTGAATTACAGAACTGTATCATAATATTTTAATGAAGGCTGTTTTGCAACTTGGAACTATTTTAATATA TGTACTTTATTTCGCTAGCAAAAATGTGATTTCATGTAAAATAAAAAGAAAAAAATATTATTACAAGTTAACTTTTGTGTGTTATTACATGACACTTGTC TCTCCATTAATGGAGAGAATCTTTAGTGGGACTAACTTGTCTATGTTCTTCCATGTTCTTTAAATTATGAATAGTTGATACAGG
• Tissue: pods
• Gene name: LI_gene_160045;
• Additional information: -

Expression of Ll_transcript_440519

FPKM

• PAB: 1.5
• PNAB: 1.1
• PS1: 0.3
• PS2: 1.1
• PS3: 1.1
• PW1: 0.8
• PW2: 0.6
• PW3: 0.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_440519

• Blastp: -
• Blastx: Mediator of RNA polymerase II transcription subunit 7b from Arabidopsis with 73.77% of identity
• Eggnog: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors(ENOG410ZFRU)
• Kegg: Link to kegg annotations (AT5G03500)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019459141.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;