| Id Trinity | TRINITY_DN48360_c6_g2_i3 |
|---|---|
| Name Transcript | Ll_transcript_439886 |
| Sequence | TTTAAGAAGTAAACCCTTCCAAACTAGCTAACATTATCATATCCAATTATTCATCTCCCTATATATTGGGAATTGGTGTGTTATATTATCCAAAAGACAT AGAGAAACCTGAAAATGCGATCCTGCTTCTTCTCCTTGAAACTGCAGCATTCATCACTTTCTCTTCTCCCTACTCACATGTCCTCATCATTATCAATGCT TTCTCTCTATCCTTTTTCTTCTTTCAACCATCGCTTCATTTCCAATTCCTTTTCTTCCTCTTCTTCTTCTTCTTCTCCTCAACCTCCAGTAATTCAGACT CCTTCACGTGTTGGCTTCTTGGGCCTCGGAATCATGGGTTCCCCTATGGCTCTTAATCTTATTCATTCTGGAATTGATGTCACTGTTTGGAATAGGACCA AGACCAAGTGTGAACCTTTAATCAACTTAGGAGCCAAATATAAATCATCTCCTGAGGAAGTAGCTGCATCTTGTGATGTCACATTTGCCATGCTTGCTGA TCCTCAAAGTGCACTGGATGTTGCTGTTGGAAAGCATGGAGCTGTAAATGGAATGGCTCCAGGAAAAGGATATGTGGATGTTTCAACAGTTGATGGGGAA ACTTCTAAACTGATTAGTCGGAACATAAAATCGGCTGGTGCATTATTTTTGGAGGCTCCGGTCTCAGGTTCCAAAAAGCCAGCAGAAGATGGGCAATTGA TATTTCTTACAGCAGGTGATAGAGATCTTTATGAATCTGTTTCTCCTTTCTTGGACATCATGGGGAAGTCAAAATTTTATCTTGGGGATGTTGGAAATGG AGCTGCAATGAAACTCATTGTCAACATGATCATGGGCAGGTTTTTTCACAATTTGTCTCCTGCTATTTACTTCCATTTTTCTTGGGCTAATGGTTCCGGT GACACAAATTTTTCTATATTTCCGATGGTCCATAGTATGATGGCATCTTTTTCTGAAGGCTTAGTTCTCAGCGAGAAAGTTGGACTGGATCCAAATGTAC TAGTGCAGGTATTTACTAGTCCATGAAAAAATTACGGATACGTTTGAAGTCTTTCATCTATCACTCCGGGCTTCAGGTAGTTCGGTTTTTTGAGAAATAT CATTGGCTTCTACCGATAATTGGATTCATCATTCTACAGAGAATTACTAATATCAAGAGCATGTGGATAGATGGATACTAATTATTAACATGCCAAAGAG AAATGATTGTGTCTCCCTGATTATCTGTCTCTACTTGATATTACGATCCACATTCTTTTGGATGAAGTGAAAATAACATTCCGTAGAACCCTTATAAAAT GGCAATTTTTGCAGGTAGTTTCACAGGGTGCTATTAATGCTCCAATGTACTCGATGAAAGGCTCATCCATGATACAGTCGCTTTACCCGACCGCGTTCCC GTTGAAGCATCAGCAGAAGGATCTAAGACTTGCACTGGGGTTAGCAGAGTCTGTTTCCCAAGCTACTCCAATTGCAGCAGCTGCTAATGAGTTATATAAA GTTGCAAAGGCCCATGGGCTTGGTGATCAGGACTTCTCAGCAGTCATTGAATCATTGAAATCCAGATTTCAGCACTCAGATGAACACTGACATTTTCATA GCATGCTTACTTCTTCTGTCAAGATTAATTTGTTGGGATTTTTGTTTCATATACCTACTTTCTGTTGATATATTTCCCTCTCCATTTTCAGTTATAACAA GTTCAGCCAAGGTTTAGTAATTTTTTAGATTTTTAATACAGGAGTGAGAATGAGGCTCGGTTATTTAGATTCTCAATGGGATTAAAATAATGTACTCCAG TGGAGTTAGTTATTGCACGATTCTGGGTCTCCTTTCTATTAGTATGAATTTTTCTTTCGGGAATACATAAAATTTGACAAATGAAAATTAAAGTTAAAGT TAAATTTGTCAGTAAATATTTACATGATTTATCCATTTATTTATATTACTTTAAAATTTGATAATAATACAATTCACTTATAAATCATGAATTGGAGTGT ATTTCTTCTTTATACTATCAAAGGTATTTTTGGGGTAAGAAATTATTTCCTTTCAAGATTTGTAGTGGTCCTTCTAATAAGTGTCATTCACAGAAATCGA AACTTTGATTTTGGAGATTAAGTAAAGTCTTACGCTACTAAACGAATGTCTTATAAGTAATTGTGGTGTATTTTAAAATACGGACGTGGGTGCAAAAAAT TCCTTAGAAAAAAGGCCGTTAGTGGGTCCATCTGTATAACCGACGCCAGCACATCCTGAGTGGCGTACAGGCCCGTGTTTGTCACGCTCTTCCTCCCGCA CGTGTAAACAATCTCCACATAGAATAGATAGATAGAGAGTTCAAATTTGTTATATTTCTTCCTTCATCAATTCATTGTTTCTAACTTTTCTCTCATCTTT CACCTCAACATGTCCGATCAAAACGCCGATCTCCCTGCTGCCGCCGCCGCTCTTAGCGCTGAGGATCGTGCTGGTCTCGTCAATGCACTTAAGGATAAGC TTCAGCTCTTGGCTGGGCAGCATGTGGATGTCCTGGAGACACTGTCACCCAAAGTTCGGCAACGCGTGGAGGTTCTCAGAGATCTTCAGGGCCAACATGA TGAGTTGGAGACTAAGTTTTTAGAGGAGCGTGCAGAGTTGGAAGCTAAATACCAGAAGCTTTATGAACCACTTTATACAAAGAGGTATGAGATTGTCAAC GGCGTGGTTGAGGTTGAAGGAATTACAGATGAAGCAGTACCAGAAAAAGAAAACAGCGCAACAGAAGAGAAAGGAGTACCTAACTTCTGGCTGACTGCAA TGAAGAGTAATGAAACACTGGTTGAGGAGATCACTGAACGTGATGAGGGGGCCCTCAAGTATCTCAAAGATATCAAGTGGAGTAGAATTCATAATCCTAA GGGATTCAAGCTGGAGTTCTTTTTTGATACTAATCCCTATTTCAAAAATTCCGTGCTAACAAAAACTTATCACATGATTGACGATGATGACCCTGTATTA GAGAAAGCAATAGGAACGGAGATTGAGTGGTACCCAGGAAAGTGCTTGACACAAAAGATTCTCAAGAAGAAACCAAAGAAAGGATCAAAGAATGCTAAAC CCATCACGAAAATTGAAAAATGTGAAAGTTTCTTCAACTTCTTCACCCCTCCCCAAGTCCCTGAGGATGATGATGATGATGATGATGATATTGATGATGA TGCTGTTGAAGAGCTCCAGAATTTGATGGAACAAGATTATGACATTGGTTCAACAATCCGGGACAAAATCATTCCTCATGCTGTGTCATGGTTCACGGGG GAGGCTGCACAAAGTGATCTTGATGAAATAGAAGCGGATGATGATGATGAGGATGATGCTGATGAGGATGATGATGACGAGGATGGGGAAGATGATGATG ATGATAATGAGGAAGAGGAAGGGAAGAGCCAGAAAAAGGGAGGTGGCAAGGCCCAACATGGTAAAGGTCAGCCAACTGAGCGCCCTGCTGAATGCAAGCA GCAGTAGTTGTTGTGTGCAACAATGGACCTGGATAAGTTGGTGTCAATGGAGTGATTATGTGCAGCCTCTGGCTTATTTCAGTCATGAATTGCAATTTAA AGTTACTATTGTCTGATCTTTTTGTTGGTTTATCATTTGGGGTCTTTGCTTGGGTTTCCTGATTCCTATGGAGTTGCCCTGTGATATGGGTTCTATTTCT TCCATTTTTTCTTCAAGTGATGAGTATATTTGCGTTGTTATCCAAAATTGTATATGACACTGTAAATATATGCTTACAGTGCTCTGCCTATTCTACCTAA GTATTCAAATTTTAATCAGTCTGTGTTCGGGTAAAACCTCAGATTATATGGTGTTTGAATGAGGAATCACGTAATGTAATTGGAGGAAGTTCCAAAGTTT ACCCAGAAAGCACAAATTAAGCAAGCAGTTGCAAGGTGCTGTTTGTTGTTTCATACAATATTGTATCATACACTTGCACTTGCACTGCTCTGCCTATTCT AATTAGTATTCAAAATTTGTTATTCTGTCTTTGGGTAAAAACTTGGAACATCGTGTTTGAGTAGGAATCATTCAACATATTTTCTTATATTTCTTATTAT TTATTGTATAAGATGAATG BLAST |
| Tissue | pods |
| Gene name | LI_gene_160387; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_439886
| Blastp | Nucleosome assembly protein 1;2 from Oryza sativa with 68.21% of identity |
|---|---|
| Blastx | Nucleosome assembly protein 1;1 from Oryza sativa with 77.74% of identity |
| Eggnog | nucleosome assembly(ENOG410XQN9) |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019458367.1) |
| Pfam | Nucleosome assembly protein (NAP) (PF00956.17) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |