Ll_transcript_439887

• Id Trinity: TRINITY_DN48360_c6_g2_i4
• Name Transcript: Ll_transcript_439887
• Sequence: TTTAAGAAGTAAACCCTTCCAAACTAGCTAACATTATCATATCCAATTATTCATCTCCCTATATATTGGGAATTGGTGTGTTATATTATCCAAAAGACAT AGAGAAACCTGAAAATGCGATCCTGCTTCTTCTCCTTGAAACTGCAGCATTCATCACTTTCTCTTCTCCCTACTCACATGTCCTCATCATTATCAATGCT TTCTCTCTATCCTTTTTCTTCTTTCAACCATCGCTTCATTTCCAATTCCTTTTCTTCCTCTTCTTCTTCTTCTTCTCCTCAACCTCCAGTAATTCAGACT CCTTCACGTGTTGGCTTCTTGGGCCTCGGAATCATGGGTTCCCCTATGGCTCTTAATCTTATTCATTCTGGAATTGATGTCACTGTTTGGAATAGGACCA AGACCAAGTGTGAACCTTTAATCAACTTAGGAGCCAAATATAAATCATCTCCTGAGGAAGTAGCTGCATCTTGTGATGTCACATTTGCCATGCTTGCTGA TCCTCAAAGTGCACTGGATGTTGCTGTTGGAAAGCATGGAGCTGTAAATGGAATGGCTCCAGGAAAAGGGTCCTGTGTTTAATTCAAAGTTTCTAACTTT TATATTTGAAATTAACATATTTTCCCACATTAGATAGAACAATTCATCCCTCTTTTGATATCAATAGACCATAGTTGTCAATACATTGCATATCTTCACT TATTTGCCAACTGATGCTGTATGTTGCGTTATGCATCCTTTGCGTAGCAATAAGCTTAGTACTCTTATATTTTCAGATATGTGGATGTTTCAACAGTTGA TGGGGAAACTTCTAAACTGATTAGTCGGAACATAAAATCGGCTGGTGCATTATTTTTGGAGGCTCCGGTCTCAGGTTCCAAAAAGCCAGCAGAAGATGGG CAATTGATATTTCTTACAGCAGGTGATAGAGATCTTTATGAATCTGTTTCTCCTTTCTTGGACATCATGGGGAAGTCAAAATTTTATCTTGGGGATGTTG GAAATGGAGCTGCAATGAAACTCATTGTCAACATGATCATGGGCAGGTTTTTTCACAATTTGTCTCCTGCTATTTACTTCCATTTTTCTTGGGCTAATGG TTCCGGTGACACAAATTTTTCTATATTTCCGATGGTCCATAGTATGATGGCATCTTTTTCTGAAGGCTTAGTTCTCAGCGAGAAAGTTGGACTGGATCCA AATGTACTAGTGCAGGTATTTACTAGTCCATGAAAAAATTACGGATACGTTTGAAGTCTTTCATCTATCACTCCGGGCTTCAGGTAGTTCGGTTTTTTGA GAAATATCATTGGCTTCTACCGATAATTGGATTCATCATTCTACAGAGAATTACTAATATCAAGAGCATGTGGATAGATGGATACTAATTATTAACATGC CAAAGAGAAATGATTGTGTCTCCCTGATTATCTGTCTCTACTTGATATTACGATCCACATTCTTTTGGATGAAGTGAAAATAACATTCCGTAGAACCCTT ATAAAATGGCAATTTTTGCAGGTAGTTTCACAGGGTGCTATTAATGCTCCAATGTACTCGATGAAAGGCTCATCCATGATACAGTCGCTTTACCCGACCG CGTTCCCGTTGAAGCATCAGCAGAAGGATCTAAGACTTGCACTGGGGTTAGCAGAGTCTGTTTCCCAAGCTACTCCAATTGCAGCAGCTGCTAATGAGTT ATATAAAGTTGCAAAGGCCCATGGGCTTGGTGATCAGGACTTCTCAGCAGTCATTGAATCATTGAAATCCAGATTTCAGCACTCAGATGAACACTGACAT TTTCATAGCATGCTTACTTCTTCTGTCAAGATTAATTTGTTGGGATTTTTGTTTCATATACCTACTTTCTGTTGATATATTTCCCTCTCCATTTTCAGTT ATAACAAGTTCAGCCAAGGTTTAGTAATTTTTTAGATTTTTAATACAGGAGTGAGAATGAGGCTCGGTTATTTAGATTCTCAATGGGATTAAAATAATGT ACTCCAGTGGAGTTAGTTATTGCACGATTCTGGGTCTCCTTTCTATTAGTATGAATTTTTCTTTCGGGAATACATAAAATTTGACAAATGAAAATTAAAG TTAAAGTTAAATTTGTCAGTAAATATTTACATGATTTATCCATTTATTTATATTACTTTAAAATTTGATAATAATACAATTCACTTATAAATCATGAATT GGAGTGTATTTCTTCTTTATACTATCAAAGGTATTTTTGGGGTAAGAAATTATTTCCTTTCAAGATTTGTAGTGGTCCTTCTAATAAGTGTCATTCACAG AAATCGAAACTTTGATTTTGGAGATTAAGTAAAGTCTTACGCTACTAAACGAATGTCTTATAAGTAATTGTGGTGTATTTTAAAATACGGACGTGGGTGC AAAAAATTCCTTAGAAAAAAGGCCGTTAGTGGGTCCATCTGTATAACCGACGCCAGCACATCCTGAGTGGCGTACAGGCCCGTGTTTGTCACGCTCTTCC TCCCGCACGTGTAAACAATCTCCACATAGAATAGATAGATAGAGAGTTCAAATTTGTTATATTTCTTCCTTCATCAATTCATTGTTTCTAACTTTTCTCT CATCTTTCACCTCAACATGTCCGATCAAAACGCCGATCTCCCTGCTGCCGCCGCCGCTCTTAGCGCTGAGGATCGTGCTGGTCTCGTCAATGCACTTAAG GATAAGCTTCAGCTCTTGGCTGGGCAGCATGTGGATGTCCTGGAGACACTGTCACCCAAAGTTCGGCAACGCGTGGAGGTTCTCAGAGATCTTCAGGGCC AACATGATGAGTTGGAGACTAAGTTTTTAGAGGAGCGTGCAGAGTTGGAAGCTAAATACCAGAAGCTTTATGAACCACTTTATACAAAGAGGTATGAGAT TGTCAACGGCGTGGTTGAGGTTGAAGGAATTACAGATGAAGCAGTACCAGAAAAAGAAAACAGCGCAACAGAAGAGAAAGGAGTACCTAACTTCTGGCTG ACTGCAATGAAGAGTAATGAAACACTGGTTGAGGAGATCACTGAACGTGATGAGGGGGCCCTCAAGTATCTCAAAGATATCAAGTGGAGTAGAATTCATA ATCCTAAGGGATTCAAGCTGGAGTTCTTTTTTGATACTAATCCCTATTTCAAAAATTCCGTGCTAACAAAAACTTATCACATGATTGACGATGATGACCC TGTATTAGAGAAAGCAATAGGAACGGAGATTGAGTGGTACCCAGGAAAGTGCTTGACACAAAAGATTCTCAAGAAGAAACCAAAGAAAGGATCAAAGAAT GCTAAACCCATCACGAAAATTGAAAAATGTGAAAGTTTCTTCAACTTCTTCACCCCTCCCCAAGTCCCTGAGGATGATGATGATGATGATGATGATATTG ATGATGATGCTGTTGAAGAGCTCCAGAATTTGATGGAACAAGATTATGACATTGGTTCAACAATCCGGGACAAAATCATTCCTCATGCTGTGTCATGGTT CACGGGGGAGGCTGCACAAAGTGATCTTGATGAAATAGAAGCGGATGATGATGATGAGGATGATGCTGATGAGGATGATGATGACGAGGATGGGGAAGAT GATGATGATGATAATGAGGAAGAGGAAGGGAAGAGCCAGAAAAAGGGAGGTGGCAAGGCCCAACATGGTAAAGGTCAGCCAACTGAGCGCCCTGCTGAAT GCAAGCAGCAGTAGTTGTTGTGTGCAACAATGGACCTGGATAAGTTGGTGTCAATGGAGTGATTATGTGCAGCCTCTGGCTTATTTCAGTCATGAATTGC AATTTAAAGTTACTATTGTCTGATCTTTTTGTTGGTTTATCATTTGGGGTCTTTGCTTGGGTTTCCTGATTCCTATGGAGTTGCCCTGTGATATGGGTTC TATTTCTTCCATTTTTTCTTCAAGTGATGAGTATATTTGCGTTGTTATCCAAAATTGTATATGACACTGTAAATATATGCTTACAGTGCTCTGCCTATTC TACCTAAGTATTCAAATTTTAATCAGTCTGTGTTCGGGTAAAACCTCAGATTATATGGTGTTTGAATGAGGAATCACGTAATGTAATTGGAGGAAGTTCC AAAGTTTACCCAGAAAGCACAAATTAAGCAAGCAGTTGCAAGGTGCTGTTTGTTGTTTCATACAATATTGTATCATACACTTGCACTTGCACTGCTCTGC CTATTCTAATTAGTATTCAAAATTTGTTATTCTGTCTTTGGGTAAAAACTTGGAACATCGTGTTTGAGTAGGAATCATTCAACATATTTTCTTATATTTC TTATTATTTATTGTATAAGATGAATG
• Tissue: pods
• Gene name: LI_gene_160387;
• Additional information: details;

Expression of Ll_transcript_439887

FPKM

• PAB: 0
• PNAB: 0
• PS1: 0.3
• PS2: 0.1
• PS3: 0.1
• PW1: 0.7
• PW2: 0
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_439887

• Blastp: Nucleosome assembly protein 1;2 from Oryza sativa with 68.21% of identity
• Blastx: Nucleosome assembly protein 1;1 from Oryza sativa with 77.74% of identity
• Eggnog: nucleosome assembly(ENOG410XQN9)
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019458367.1)
• Pfam: Nucleosome assembly protein (NAP) (PF00956.17)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;