| Id Trinity | TRINITY_DN48410_c0_g1_i7 |
|---|---|
| Name Transcript | Ll_transcript_364397 |
| Sequence | TTGCTCTCATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTTTGCAGCAGTTCAAGCATGCTGAAGACGTTAGAGAGGTACCAGAAATGTAACTATGG AGCACCTGAGGCTAATGTTTCTACAAGGGAAGCTTTGGAGTTGAGTAGTCAACAGGAATACTTGAAGCTGAAGGCACGTTATGAAGCCCTCCAAAGATCC CAAAGGAACCTTATGGGAGAGGATCTTGGTCCTCTGAGCAGCAAAGAGCTCGAGTCACTTGAAAGACAGCTAGATTCTTCATTGAAGCAAATCAGATCAA CAAGGGTAAGAATGTTTCTAATGCTAACCGATAACACCTGAAATTATGAAGGAACATATAATCCTAACACATTTTCAGATAATAACTTTAGTTAACACTG AACAGTAATTATACAACTGAAGCAGAGAAAAATAAGATAATTAGAATTATATCATTTTTATGCAAGGGTTAAATAGTAATGAGGAAAAAAATAATATGCT TGCCAATTGGTTTTCTTATTTTATTAGTTAAAAGAGAAGAGATTCAGGTATATAATTATAGACATACATTTTTCATTCTTATAGTATAATCTCTAACTAA TATTACTGTTAATTTTCCATATCTAAGAAATGCATTGACTAACATCTTCATATATCTAGAGAATCTAGATTATTATATGTTATGCCTTTCTAATCATATG CCATTTTATAGATAATTTTTGGAAATGTGAAGAATTTTATATTTTAATTCTCATCCTTGATACACCTTTTTGTAACTCCAAGAACCCATCATAGTTGTTT GAACTTTAGACTATGTAATGTCTTTATGAATATATCTCTGCAATTTTTCTTTGGCCTTGCATTTTTATCTCCATGATCACTATATATTTTATTTTGTTGT AAAGGATTGGACTCTTCCCCATTGCTATTACCAAATTGTCACAATAGATTATACTTGGCTCCATTTATTGATCTTCAATATTACCATGTATTCTTCTAAT TATATAGTTTGATTTGTCATATTATTGATTGTACAATAATTGCTCGTTTCTTAGATGCTTGAGAGAATACTCTTGAACTGACCTAGTTATTAACGGTGCA GTCTTGCAACCTTGAGTTATTGTTTGTCATATATCATATATCAAACTCTTTTTCCTTGCAAGTATCTTATAATTCTCTTGTCGGCTTCCAAGTGAATTTG ATTTAGGATTTGCATGATCCCTAATAGAAAACTTATATCATACATGATATCTGATAGTATGACAGTGAGTTATAGAAGACTCCAAACTTCTACACAATGA TACATTTTCCTTATAAGACTGATTATCCTTATACAACTTCTCATTATTCATTAGTGGAGTAGCAACATGTATTCATTCAAGCATCTTGAACTTCTTGAAT AGTTCTTCCGAGTACTTTCATCCATGAGACATTGTTTCTTCTTTTCTTTGATTTGCCACAATGTCAACGAAGTAGTGCATTACACCAAGGTCTGACATCA CGATGGTCTTCATAATGTCTTTTTTGAAACTCCGTTATCATTTTCATATTATTTCATGTAGATACGATCATCTACATATAAGGAGATAATAAGAGTTTTG TACTGACCTTGAATCTTAGGGTTAGTTCGAGAGTTAAATTTTGGAGGGGAAAGAAAGAAAATGGAAGGTTCGAGAGTCATCTTAAAAATATATTTCATGG CTCTCAAGCCTTCAATTTCACTTCTTCTCCCTCCAAAAATCAACTCCCAAACAGACCCTTAAGATATACCATAAACTCAATTTCACAAGCCTGAAACTTG TAGTTATTATGGTAAGATCGGGTTATTCTGTCAACATTTCCTTCATCCTAATTCTGAGTAGCACTTTAATCAACTTAAATATCTCGATTAATCTATCTTT GAATATTATAAATCTAACAGCTATTTGGTTATGTGCTATATTCTAAGAAGATATTTTGATAAAAAATTGTGATAAGAATACATGATAGTTAAATAGTTCT TACCAGATTTAAACAAATACATAGAAAAGCTTTAGACTAGATAACAAAATTTTGAGGTTGTTGAAAATTAGTTTAAGTGATGGTTTTTGCAAGGTGTGAG ATAGAACTTAACTCTAACATTTTATCTTTAGATTATTCCATTAACATAATATATTAACATCTTTGATAAATTCTAGATAATATAAATTATTCTATGTTAT GCCTTTGTAATGCTATGCAACTTTGTAGATGATTGTAGAAATATGCAGCATTAGATATTTTAACACAGTTTCCTCTACAGACCCAGTTCATGCTGGATCA GCTATCTGATCTTCAACGCAAGGTATAATATAACAATTTTGCTTTCCTTTGCCACCATTTGTTGTGTACCTTCTTTTAGTACTCATCAATTTTATGTCAC CTGGATAGGAACACTTGCTAAGTGAGGCTAACAGATCTTTGAGACAAAGGGTAAGAAACATCTCACCAAATTAAACTATATATGTAAAATAAATCGGCAG CATAGTGCATGAGACTTCCTCTTAATGGGATTTGAGGAGGATAGATCGTCACATCACACAAGCCTTTCTCTACGAATAGAGACTATTTATAAGATTTAAA CTATTGATTTTATGGTCACTTAAAGGATCAGTCTTGACATATCTAAGGCTCTATCCAAGTAAAACAATATAGGTCCTAAATTTATTAAAAAAATTATATA CAATTTTCTATGGGACTAGGAAAATTGTGGCTATAAGTTCATGTCAAAGTTTTAGTAACAAAATTGATTTTTTAGACATTATGTAAAACTTAACATCAAA TGTTGAACAAAATATAGATTTATAAGTTTCAAATTACACGAGTCTTAAAATTTTAATAATCTTATCTCTATTATCATATTTATTGAATGAATTTAAATTA GAACTATGAAATGTATTAAAATTATTATATGATTTATAAAAATAAACATATTAATAAAGAAAAAAGAAAATATTTAATTAAAATTATTGAGAAAATGATG CATATACTAACATTGTAAGAAATTTTACACTATCATTATATCATCTACCATTTATTTTTAATTATCATTGATTTTTAAATAAAAGTAGTGCAAATAAAAG ATGGATAATATATTGACCGTGTATAAACCTTTATATCGGTGCATACATATTACACTCAAAATTATTATTTTTAAATTGGCTTCTTTTCATTGTGATGGGC GTCGCACCTGCCGAGGTTTGTCGTAATCACTAATCAATAACTTTACCCTTTCGCCGGCTTATAACCCTATTTTGATATTGAAAATTGAATGGCATAAGTG AAAGTGTTTGTTGTTTAATTAGCAGTTGGAAGGGTATCAAATAAATGCACTCCAACTAAATCCTAGTGTTGAAGATATGGGATA BLAST |
| Tissue | pods |
| Gene name | LI_gene_160844; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_364397
| Blastp | Agamous-like MADS-box protein AGL9 homolog from Lycopersicon with 88.29% of identity |
|---|---|
| Blastx | Agamous-like MADS-box protein AGL9 homolog from Lycopersicon with 88.29% of identity |
| Eggnog | Transcription factor(COG5068) |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_006579436.1) |
| Pfam | K-box region (PF01486.16) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |