Ll_transcript_363315

• Id Trinity: TRINITY_DN48421_c2_g3_i1
• Name Transcript: Ll_transcript_363315
• Sequence: GATTGTCAAAGTATAGTCACTTTGTGCTGCTGAAACATCCTTACCCAGCAAAGGCAATTGCTGAAATTTTTGCCAAGGAGGTGGTTAGACTACATGGGAT CCCGAAAGCCATTGTTAGTGACAGGGATCCCATATTTGTTAGTAACTTTTGGAAAGAACTTTTTAAAATGCAGGGGACCCAATTAAAAATGAGCACTGCC TATCATCCGCAAACTGATGTTCAAACCGAAGTTGTGAACAGATGTTTAGAGACATTTTTAAGATGTTTTATTGCTGACCAACCTAAGACATGGATCTACT GGTTGCATTGGGCAGAGTATTGGTATAACACTACTTTTCAACAATCAATTGGAATGACACCATTTGAAGTGGTATATGGGCGGAAGCCTTCTCTTCTAAA TCGTTTTGTGCAGGGTGAAACTCTAGTTGAAGCTGTCCAAAGAGAGCTCATGGATCGCGATGAAGCACTGCGACAATTGAAACAACACTTGGTCAGAGCA CAGGGCAGAATGAAGAACCAAGCAGATTCGAAGAGGCAAGAAAGGAGTTTTGAAGTGGGAGAATTGGTCTTTCTGAAACTCCGTCCCCACAGGCAAGGTT CTGTGGTGACTCGAATCAACCCAAAGTTGGCTGCCAGGTTCTATGGACCTTTCCAAGTCATTGAGCGTGTAGGAACAGTGGCTTATAAATTGAAGTTACC AGAAACATCACGAATTCACCCTGTGTTTCATGTATCGTTACTTAAGAAAGCTGTGGGGGACTACAAGATTGAAACCGAGTTGCCGGTGGGTATGGATGGA GAACAAGGAGAAGAATTAGAACCTGCAATAGTTCTTGCATCTAGACAGGTTAATAAGAGTGGAGAAAGTTTGCAGCAAGTCTTAGTGCAATGGAAAGGGC AGTCCTCAGAGAATGCAACATGGGAGGATATTTATTCTATGAAAAGTCAGTTTCCTCAATTCAGTCTTGAGGACAAGACTGTCCTATAGGAGTGATAGAA TCTTAGATGTGGAGAGAGGTCAACTCATTGACCAGTTGAGCCATGGGCCAAAGATTTGGAAAGTGTATTCTAGAAGGGGCAGAAAAGAGATATGATATCT ATGATGATGTGGAAGTGAGAGAAGATACATTTGCACAAAGGGAGTTACAATATTGAAAGTGACTTTACTGTTATATATGAGTGAGTGGGAGAGGAAATGA CATCTTTTGTAATGATGGGAAACTGATAGGACAGAGAACGTTTCATTCTCTGTAGGAGCTAGTAGAAGAAATTCTACTGCATCTTTATTTTCTTCTGCTT TCAATAATCAGTTTGCTTTTCTCTTTTTTCCCTCTTTCTGTGTTTCTCTTTGTGACTTTCTGATACTAGAACATATCAAACTGGTCCGACCTGCCGGATA CTTTGTGAAGGCGTTAGGTGCAACAAAACCCAAGGCATAAGGTGTTGATCTTTCTTTGAATGCCACCAAAGAAGAACTCGGGAAAAGTTGTTGACATGGA AGCAAGGATGGCGAGTTTCGAAAATGAACTCAACAACCTCAAAATCACAGTGGCAGAATCACAGATGAAAATGGAGGCAAGCTTGGAGAAGATTATGGCA GCTCTGAACCGCGATGATTACATTAAGTCGGTGATGGATGAGGAGAGAACCGAAGAGGGTGGAAGCATTCATAACACCACACGTGAACATCGTAAGGTGA TTGTTTCTGGAACCTCTGGATCCCTAAAGAAGTTGCAGGGAGAAGCCCTTGAGGAGTTCCGACAATCGGTGAAGAAAGTAGAGTTGCCGATATTTCATGG CGATGATCCTGCTGGTTGGATCTCACGTGCAGAGGTGTATTTCAGAATTCTGGACACTAATCCTGAGGTAAGAATTAGCTTGGCCCAACTCTGTATAGAG GGATTCGTCATTTATCCTACAATGAAATTGCTGATCGTAGACAAAGAGGGCTCTGTTTCAAGTGTGAGAATAAATTTCATCCTATGCACCAATGTCCTAA TAAGCAGTTGAGAGTCATGGTATTAGAGGAAAACGAAGAAAAAAATGGTGATGAGAACTTTGAAACAGTGGAGCAAGAGGAAGAGGAAGTAGTAGATGGA GAATGCAGTGTTATCAACCTTGGAAGCCTAGAAAGCAGGGAGGGTCGGCAGTTTCAAACGATGAAATTAAAAGGGGAAATCGAAGGGGTACCGATACTGG TGTTGATTGACAGTGGGGCGACACATAACTTTATTTCCAAAAGGTTGATTGAAGCTATGGGAAAACCTTTTGTGGATACAAAAGAGATGACTATGAAGCT TGGCAATGGACATTGCACAACAACTAGGGGGAAGTGTGAGAATATAGAAGTGGAAATTGGCAGAATAAAAATTATAGTTAATGCTCAATTGTTTGAGTTG GGAGACATAGACCTTAGGGGAAATGGTTATTGATTGGGGGAAGAAAATAATGAAGGTGATGATAGAGGGGAGGTCAGTGGAGTTAAAAGGTGAAAGGCAT GATTCACATACTGCCTTCCAAAGTTTATTTGCTGAAACTCAAGTATGGGTAGAAGGAATGTACATGTCAACAAGCCTTCAAATATCAGAAACAGTACATG AGGCAGGGGAAGTTAAAAATTTAAATTTAGAGCAACAAACAGAGTTGAAGACTATGTTATCTAGGTTTGTTGAAGTGTTCCAAGAACCTAAAGGGTTACC TCCCAAGAGAAACAGGGAACATGCAATAGTGTTGCTAGAAGGACAAGGTCCAGTGAATGTTGGACCATATAGATATCCTCATCATCATAAAGATGAGATT GAAAAACAGGTGAAAGAGATGTTGCAAACAGGAATCGTGAGACCTAGTCAGAGTGCCTTCTCCAGCCCAGTCATATTAGTCAAAAAGAAGGATGCGACAT GGCGTATGTGCGTAGATTATCGAGCTTTGAACAGAGCCACTGTCCCCGATAAATTTCCAATCCCGGTTATTGATGAATTGCTAGATGAAGTACATGGAGC AAAATTTTTCTCCAAATTCGATCTCAAGTCGGGGTACCACCAAATAAGGATGAAGGCAGAGGATGTTCATAAGACTGCTTTTAGAACCCATGAAGGACAC TATGAGTACTTAGTCATGCCATACGGATTGATGAATGCTCCATCTACATTTCAAGCTTTGATGAATGATGTATTTAGAGAAATGTTGAGGAAGTGGGTTT TAGTGTTCTTTGATGACATCCTAGTGTATAGTTCAAGTTGGGAAGAGCATTTGCAACATTTAACTATGGTATTTGAAAAATTACAGCAACATCAACTAGT AGCAAACAAGAAAAAATGTCAGTTTGCTCAATTTGCGATTGAGTACTTGGGACACATAGTTTCAAAGGAAGGGGTAGCAATGGATCTGCCTAAAGTGGAG AGTGTGTTGAATTGGCCAATTCCAAAGTCAGTAAAAGGGGTAAGAGGATTCTTGGGCCTTACAGGGTATTATAGGAAATTCATCAAAGACTATGGCAAGA TTGCTAGGCCATTAACTGAGCTGACAAAGAAGGAAGGTTACCATTGGAATGCCAAGGCCCAAGAAGCTTTTGAGGGACTCAAGAAGGCTATGGTTGAAGC TCCTGTGTTGACACTTCCAGACTTCAACAAGGAATTCTTGATTGAGAGTGATGCTTCAGGAGGAGGAGTAGGAGCAATACTAATCCAACAAGGGAAACCT ATAGCTTACTTCAGCAAGGCATTTGGGGTAAGCAATCTCTCCAAATCTGCTTACGAAAAAGAATTAATGGCAGTGGTACTAGCAATTCAACATTGGAGGC CATATTTGGTTGGGAGAAAATTTACGGTGTGTACAGACCAAAAGAGTTTGAGACAATTATTGCAACAAAGAATCACAACAATGAGCCAACAAAATTGGAT GTCTAAGCTTTTAGGCTACCAATTTGAAATTATTTACAAACAAGGAGTTGAAAATAGAGGAGCAGATGCCTTATCCCGATTGCATGAGGAGGGTGGTTCT TTTTGCTATATTAGAATGTTCCGACTTGGAGAGACATCAATGCTATAATGGCTGAAGTACATGAAGATGAGAATTTGAGATCAATTGTGGAAGAATTGGA GGCAGGAAAAGAGACGAAACCCGACTTTGTTTATACTAATGGAGTTCTTATGTTTAAGGGAAGATTGGTCATTTCTGCAACATCTAAATGGATCCCTCAA TTGCTACAAGAGTACCATTCTACTCTTCAAGGTGGACATTCTGGATTTTATAGAACATACCGTTGCGTGGCTACCAATCTTTTCTGGTTTGGAATGAAGA AAATGGTCCAAGATTTTGTGCAGCGATGTGATGTGTGTCAAAGGCAAAAATACTTAGCTACCACTCCTGGGGGTTTATTGCAACCACTACCGATTCCAGA TCAGATATGGGAGGAAGTCTCTATGGATTTTATAACAGGACTTCCGGAGTCCAAAGGATTTGAGGCAATCTTAGTTGTGGTGGACAGATTGTCAAAGTAT AGTCACTTTGTGCTGCTGAAACATCCTTACCCAGCAAAGGCAATTGCTGAAATTTTTGCCAAGGAGGTGGTTAGACTACATGGGATCCCGAAAGCCATTG TTAGTGACAGGGATCCCATATTTGTTAGTAACTTTTGGAAAGAACTTTTTAAAATGCAGGGGACCCAATTAAAAATGAGCACTGCCTATCATCCGCAAAC TGATGTTCAAACCGAAGTTGTGAACAGATGTTTAGAGACATTTTTAAGATGTTTTATTGCTGACCAACCTAAGACATGGATCTACTGGTTGCATTGGGCA GAGTATTGGTATAACACTACTTTTCAACAATCAATTGGAATGACACCATTTGAAGTGGTATATGGGCGGAAGCCTTCTCTTCTAAATCGTTTTGTGCAGG GTGAAACTCTAGTTGAAGCTGTCCAAAGAGAGCTCATGGATCGCGATGAAGCACTGCGACAATTGAAACAACACTTGGTCAGAGCACAGGGCAGAATGAA GAACCAAGCAGATTCGAAGAGGCAAGAAAGGAGTTTTGAAGTGGGAGAATTGGTCTTTCTGAAACTCCGTCCCCACAGGCAAGGTTCTGTGGTGACTCGA ATCAACCCAAAGTTGGCTGCCAGGTTCTATGGACCTTTCCAAGTCATTGAGCGTGTAGGAACAGTGGCTTATAAATTGAAGTTACCAGAAACATCACGAA TTCACCCTGTGTTTCATGTATCGTTACTTAAGAAAGCTGTGGGGGACTACAAGATTGAAACCGAGTTGCCGGTGGGTATGGATGGAGAACAAGGAGAAGA ATTAGAACCTGCAATAGTTCTTGCATCTAGACAGGTTAATAAGAGTGGAGAAAGTTTGCAGCAAGTCTTAGTGCAATGGAAAGGGCAGTCCTCAGAGAAT GCAACATGGGAGGATATTTATTCTATGAAAAGTCAGTTTCCTCAATTCAGTCTTGAGGACAAGACTGTCCTATAGGAGTGATAGAATCTTAGATGTGGAG AGAGGTCAACTCATTGACCAGTTGAGCCATGGGCCAAAGATTTGGAAAGTGTATTCTAG
• Tissue: pods
• Gene name: LI_gene_160946;
• Additional information: details;

Expression of Ll_transcript_363315

FPKM

• PAB: 0
• PNAB: 0.1
• PS1: 0
• PS2: 0.2
• PS3: 0.1
• PW1: 0.2
• PW2: 0
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_363315

• Blastp: Retrovirus-related Pol polyprotein from transposon 297 from Sophophora with 41.56% of identity
• Blastx: Transposon Tf2-9 polyprotein from Schizosaccharomyces with 32.78% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_020207083.1)
• Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) (PF00078.26)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;