| Id Trinity | TRINITY_DN48421_c2_g3_i2 |
|---|---|
| Name Transcript | Ll_transcript_363326 |
| Sequence | GATTGTCAAAGTATAGTCACTTTGTGCTGCTGAAACATCCTTACCCAGCAAAGGCAATTGCTGAAATTTTTGCCAAGGAGGTGGTTAGACTACATGGGAT CCCGAAAGCCATTGTTAGTGACAGGGATCCCATATTTGTTAGTAACTTTTGGAAAGAACTTTTTAAAATGCAGGGGACCCAATTAAAAATGAGCACTGCC TATCATCCGCAAACTGATGTTCAAACCGAAGTTGTGAACAGATGTTTAGAGACATTTTTAAGATGTTTTATTGCTGACCAACCTAAGACATGGATCTACT GGTTGCATTGGGCAGAGTATTGGTATAACACTACTTTTCAACAATCAATTGGAATGACACCATTTGAAGTGGTATATGGGCGGAAGCCTTCTCTTCTAAA TCGTTTTGTGCAGGGTGAAACTCTAGTTGAAGCTGTCCAAAGAGAGCTCATGGATCGCGATGAAGCACTGCGACAATTGAAACAACACTTGGTCAGAGCA CAGGGCAGAATGAAGAACCAAGCAGATTCGAAGAGGCAAGAAAGGAGTTTTGAAGTGGGAGAATTGGTCTTTCTGAAACTCCGTCCCCACAGGCAAGGTT CTGTGGTGACTCGAATCAACCCAAAGTTGGCTGCCAGGTTCTATGGACCTTTCCAAGTCATTGAGCGTGTAGGAACAGTGGCTTATAAATTGAAGTTACC AGAAACATCACGAATTCACCCTGTGTTTCATGTATCGTTACTTAAGAAAGCTGTGGGGGACTACAAGATTGAAACCGAGTTGCCGGTGGGTATGGATGGA GAACAAGGAGAAGAATTAGAACCTGCAATAGTTCTTGCATCTAGACAGGTTAATAAGAGTGGAGAAAGTTTGCAGCAAGTCTTAGTGCAATGGAAAGGGC AGTCCTCAGAGAATGCAACATGGGAGGATATTTATTCTATGAAAAGTCAGTTTCCTCAATTCAGTCTTGAGGACAAGACTGTCCTATAGGAGTGATAGAA TCTTAGATGTGGAGAGAGGTCAACTCATTGACCAGTTGAGCCATGGGCCAAAGATTTGGAAAGTGTATTCTAGAAGGGGCAGAAAAGAGATATGATATCT ATGATGATGTGGAAGTGAGAGAAGATACATTTGCACAAAGGGAGTTACAATATTGAAAGTGACTTTACTGTTATATATGAGTGAGTGGGAGAGGAAATGA CATCTTTTGTAATGATGGGAAACTGATAGGACAGAGAATGTTTCATTCTCTGTAGGAGCTGAGCTCTGTGGGTAGTAGAAGAAATTCTACTGCATCTTTA TTTTCTTCTGCTTTCAATAATCAGTTTGCTTTTCTCTTTTTTCCCTCTTTTTGTCTTTCTCTTTGTGACTTTCGGATACTAGAACGTATCAAACTGGTCC GACTTACCGAATACTTTGTGAAGGCGTTAGGTGCAACAAAACCCAAGGCATAAGGTGTTGATCTTTCTTTGAATGCCACCAAAGAAGAACTCAGGAAAAG TTGTTGACATGGAAGGAAGGATGGCGAGTTTCGAAAATGAACTCAACAACCTCAAAATCACAGTGGCAGAATCACAGATGAAAATGGAGGCAAGCTTGGA GAAGATTATGGCAGCTCTGAACCGCGATGATTACATTAAGTCGGTGATGGATGAGGAGAGAACCGAAGAGGGTGGAAGCATTCATAACACCACACGTGAA CATCGTAAGGTGATTGTTTCTGGAACCTCTGGATCCCTAAAGAAGTTGCAGGGAGAAGCCCTTGAGGAGTTCCGACAATCGGTGAAGAAAGTAGAGTTGC CGATATTTCATGGCGATGATCCTGCTGGTTGGATCTCACGTGCAGAGGTGTATTTCAGAATTCTGGACACTAATCCTGAGGTAAGAATTAGCTTGGCCCA ACTCTGTATAGAGGGATTCGTCATTTATCCTACAATGAAATTGCTGATCGTAGACAAAGAGGGCTCTGTTTCAAGTGTGAGAATAAATTTCATCCTATGC ACCAATGTCCTAATAAGCAGTTGAGAGTCATGGTATTAGAGGAAAACGAAGAAAAAAATGGTGATGAGAACTTTGAAACAGTGGAGCAAGAGGAAGAGGA AGTAGTAGATGGAGAATGCAGTGTTATCAACCTTGGAAGCCTAGAAAGCAGGGAGGGTCGGCAGTTTCAAACGATGAAATTAAAAGGGGAAATCGAAGGG GTACCGATACTGGTGTTGATTGACAGTGGGGCGACACATAACTTTATTTCCAAAAGGTTGATTGAAGCTATGGGAAAACCTTTTGTGGATACAAAAGAGA TGACTATGAAGCTTGGCAATGGACATTGCACAACAACTAGGGGGAAGTGTGAGAATATAGAAGTGGAAATTGGCAGAATAAAAATTATAGTTAATGCTCA ATTGTTTGAGTTGGGAGACATAGACCTTAGGGGAAATGGTTATTGATTGGGGGAAGAAAATAATGAAGGTGATGATAGAGGGGAGGTCAGTGGAGTTAAA AGGTGAAAGGCATGATTCACATACTGCCTTCCAAAGTTTATTTGCTGAAACTCAAGTATGGGTAGAAGGAATGTACATGTCAACAAGCCTTCAAATATCA GAAACAGTACATGAGGCAGGGGAAGTTAAAAATTTAAATTTAGAGCAACAAACAGAGTTGAAGACTATGTTATCTAGGTTTGTTGAAGTGTTCCAAGAAC CTAAAGGGTTACCTCCCAAGAGAAACAGGGAACATGCAATAGTGTTGCTAGAAGGACAAGGTCCAGTGAATGTTGGACCATATAGATATCCTCATCATCA TAAAGATGAGATTGAAAAACAGGTGAAAGAGATGTTGCAAACAGGAATCGTGAGACCTAGTCAGAGTGCCTTCTCCAGCCCAGTCATATTAGTCAAAAAG AAGGATGCGACATGGCGTATGTGCGTAGATTATCGAGCTTTGAACAGAGCCACTGTCCCCGATAAATTTCCAATCCCGGTTATTGATGAATTGCTAGATG AAGTACATGGAGCAAAATTTTTCTCCAAATTCGATCTCAAGTCGGGGTACCACCAAATAAGGATGAAGGCAGAGGATGTTCATAAGACTGCTTTTAGAAC CCATGAAGGACACTATGAGTACTTAGTCATGCCATACGGATTGATGAATGCTCCATCTACATTTCAAGCTTTGATGAATGATGTATTTAGAGAAATGTTG AGGAAGTGGGTTTTAGTGTTCTTTGATGACATCCTAGTGTATAGTTCAAGTTGGGAAGAGCATTTGCAACATTTAACTATGGTATTTGAAAAATTACAGC AACATCAACTAGTAGCAAACAAGAAAAAATGTCAGTTTGCTCAATTTGCGATTGAGTACTTGGGACACATAGTTTCAAAGGAAGGGGTAGCAATGGATCT GCCTAAAGTGGAGAGTGTGTTGAATTGGCCAATTCCAAAGTCAGTAAAAGGGGTAAGAGGATTCTTGGGCCTTACAGGGTATTATAGGAAATTCATCAAA GACTATGGCAAGATTGCTAGGCCATTAACTGAGCTGACAAAGAAGGAAGGTTACCATTGGAATGCCAAGGCCCAAGAAGCTTTTGAGGGACTCAAGAAGG CTATGGTTGAAGCTCCTGTGTTGACACTTCCAGACTTCAACAAGGAATTCTTGATTGAGAGTGATGCTTCAGGAGGAGGAGTAGGAGCAATACTAATCCA ACAAGGGAAACCTATAGCTTACTTCAGCAAGGCATTTGGGGTAAGCAATCTCTCCAAATCTGCTTACGAAAAAGAATTAATGGCAGTGGTACTAGCAATT CAACATTGGAGGCCATATTTGGTTGGGAGAAAATTTACGGTGTGTACAGACCAAAAGAGTTTGAGACAATTATTGCAACAAAGAATCACAACAATGAGCC AACAAAATTGGATGTCTAAGCTTTTAGGCTACCAATTTGAAATTATTTACAAACAAGGAGTTGAAAATAGAGGAGCAGATGCCTTATCCCGATTGCATGA GGAGGGTGGTTCTTTTTGCTATATTAGAATGTTCCGACTTGGAGAGACATCAATGCTATAATGGCTGAAGTACATGAAGATGAGAATTTGAGATCAATTG TGGAAGAATTGGAGGCAGGAAAAGAGACGAAACCCGACTTTGTTTATACTAATGGAGTTCTTATGTTTAAGGGAAGATTGGTCATTTCTGCAACATCTAA ATGGATCCCTCAATTGCTACAAGAGTACCATTCTACTCTTCAAGGTGGACATTCTGGATTTTATAGAACATACCGTTGCGTGGCTACCAATCTTTTCTGG TTTGGAATGAAGAAAATGGTCCAAGATTTTGTGCAGCGATGTGATGTGTGTCAAAGGCAAAAATACTTAGCTACCACTCCTGGGGGTTTATTGCAACCAC TACCGATTCCAGATCAGATATGGGAGGAAGTCTCTATGGATTTTATAACAGGACTTCCGGAGTCCAAAGGATTTGAGGCAATCTTAGTTGTGGTGGACAG ATTGTCAAAGTATAGTCACTTTGTGCTGCTGAAACATCCTTACCCAGCAAAGGCAATTGCTGAAATTTTTGCCAAGGAGGTGGTTAGACTACATGGGATC CCGAAAGCCATTGTTAGTGACAGGGATCCCATATTTGTTAGTAACTTTTGGAAAGAACTTTTTAAAATGCAGGGGACCCAATTAAAAATGAGCACTGCCT ATCATCCGCAAACTGATGTTCAAACCGAAGTTGTGAACAGATGTTTAGAGACATTTTTAAGATGTTTTATTGCTGACCAACCTAAGACATGGATCTACTG GTTGCATTGGGCAGAGTATTGGTATAACACTACTTTTCAACAATCAATTGGAATGACACCATTTGAAGTGGTATATGGGCGGAAGCCTTCTCTTCTAAAT CGTTTTGTGCAGGGTGAAACTCTAGTTGAAGCTGTCCAAAGAGAGCTCATGGATCGCGATGAAGCACTGCGACAATTGAAACAACACTTGGTCAGAGCAC AGGGCAGAATGAAGAACCAAGCAGATTCGAAGAGGCAAGAAAGGAGTTTTGAAGTGGGAGAATTGGTCTTTCTGAAACTCCGTCCCCACAGGCAAGGTTC TGTGGTGACTCGAATCAACCCAAAGTTGGCTGCCAGGTTCTATGGACCTTTCCAAGTCATTGAGCGTGTAGGAACAGTGGCTTATAAATTGAAGTTACCA GAAACATCACGAATTCACCCTGTGTTTCATGTATCGTTACTTAAGAAAGCTGTGGGGGACTACAAGATTGAAACCGAGTTGCCGGTGGGTATGGATGGAG AACAAGGAGAAGAATTAGAACCTGCAATAGTTCTTGCATCTAGACAGGTTAATAAGAGTGGAGAAAGTTTGCAGCAAGTCTTAGTGCAATGGAAAGGGCA GTCCTCAGAGAATGCAACATGGGAGGATATTTATTCTATGAAAAGTCAGTTTCCTCAATTCAGTCTTGAGGACAAGACTGTCCTATAGGAGTGATAGAAT CTTAGATGTGGAGAGAGGTCAACTCATTGACCAGTTGAGCCATGGGCCAAAGATTTGGAAAGTGTATTCTAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_160946; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_363326
| Blastp | Retrovirus-related Pol polyprotein from transposon 297 from Sophophora with 41.56% of identity |
|---|---|
| Blastx | Transposon Tf2-9 polyprotein from Schizosaccharomyces with 32.78% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_020207083.1) |
| Pfam | Reverse transcriptase (RNA-dependent DNA polymerase) (PF00078.26) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |