Ll_transcript_363953

• Id Trinity: TRINITY_DN48463_c2_g5_i1
• Name Transcript: Ll_transcript_363953
• Sequence: TGGGAATGGACAAGAAACAAATTTTAAGCACTGAATCAATGACATAATAAATCATGGAGTAAATTAATGGAGGAAAATCTTAAAACCAAAAACTAAGAAT TACACTTTCCTTTTTACCCAATATTCTTATCTATATATTTCTCTAGACAAACAGAAAACACACCTTTATTGCTTTAACTCCTTTTCATTCATGTAGCAAC TATTACGATACTCACCATTCCCATTCTATCTTCTCTCTTTCCCACTTCTCTCTCTCAAAAAATGCTCCTTCCATTGTTAACCTTACTCTTAACACTGAAC AACAACTACTACTCCCCTTACCATGTCTCAGCTGAAGTAGTAGAAACATGTTCCAACATAGTACCCTTCAACCATAGAAAACATAACATTTCAATAACTG AATTTGGTGGAGTTGGTGATGGACACACACTAAACACAAAAGCATTCAGAGAAGCCATTTACATGATAACACACTTGGGAAGGGTTGGAGGAACCTTACT GTATGTTCCACAAGGTGTCTTCTTAACTGGACCCTTTAATCTCACTAGTAACATCACCCTTTATCTTGCTTCTGGTGCTGTTATCAAAGCTACACAGGAC ACACTAAATTGGCCCTTAATTGCACCCTTGCCATCATATGGAAGAGGTAGGGAGCTCCCTGGAGGAAGGTATATAAGTTTAATTCATGGAGATGGAGTTC AAGATGTGATAATCACAGGCGAGAATGGGACAATTGATGGGCAAGGTGATGTTTGGTGGAACATGTGGAGACAGGGAACTCTTCAGTATACCAGACCAAA CCTTGTTGAATTTCTGAATTCGAGAAATATTATTATTTCAAATGTGATTTTCAAGAATTCCCCCTTCTGGAATATACACCCAGTTTACTCCAGCAATATT GTTGTTCGGTTTCTCACAATTTTGGCTCCACGAGACTCTCCTAATACTGATGGAATCGATCCAGATTCAACTTCAAATGTGTGCATAGAGGACTCATACA TATCTACAGGAGATGATCTTGTGGCAGTGAAAAGTGGATGGGATGAGTATGGGATTGCTTATGGTCGCCCTAGCTCTGATATCACCATCCGGCGTGTGAC CGGATCATCTCCATTCGCAGGCATTGCTATCGGAAGTGAAGCCTCTGGTGGAGTGGAGAATGTACTTGCTGAACACATCAACCTTTACAACATGGGAATT GGTATCCACATTAAGACAAATATTGGGAGGGGAGGTTATATAAAGAATATAACCTTGTCTCATGTGTATGTGGAGGATGCAAGGATAGGAATAAAAATTT CAGGTAATGTTGGAGACCATCCTGATGACAAATATGATCCTAATGCTCTTCCAGTTGTTAAGGGTATCATTGTTAAGAATGTTTGGGGTGTGAAGGTTCT ACAAGCAGGGTTGATACAAGGATTGAAAAATTCGCCTTTCACTGAAATTTGCCTATCAGATATCAACCTTCATGGAGTGACTGGAACTAGAACTCCACCT TGGAAGTGTTCGGATGTGTCTGGAATTGCTCTTCAAGTTAGCCCATGGCCATGTTCCGAGTTGATCAGCCACGAGCCAGGATCATGTGCCAATTACTCTT GAGGCTAATGACGATTCTCTTTTTCAACTCTTGGAGTAGTGATAATGATCTTCTTTTAGTTGATTTATCATAGTGAATGAGAAAAAGGTGGTCCAGAACA CAAGGCTCGATTATTATTATAAAACATGTTAAGGCAAACTACGTACAAAAAAGTGAAAACAGCTTGAAAGGTGAAACATGGAACTGGTTGGCAAACTGTA GTTGGAAATCAACTACATTTTATTCAGAAATCTCAAGTCTGTTGCATATTTTCCAGATCAATTTCTTTTGCATGATCACTTAGCCTGTCTCTGTGGAAAT TAAATACGTGGCCATCATTATATAAATATTTAAGGTTTAAATACGTTTTTATGCTAAGTTAATTTTTGTTTTAC
• Tissue: pods
• Gene name: LI_gene_161268;
• Additional information: details;

Expression of Ll_transcript_363953

FPKM

• PAB: 2.5
• PNAB: 53.1
• PS1: 26.5
• PS2: 17.2
• PS3: 36.2
• PW1: 37.6
• PW2: 34
• PW3: 5.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_363953

• Blastp: Probable polygalacturonase from Vitis with 52.24% of identity
• Blastx: Probable polygalacturonase from Vitis with 51.49% of identity
• Eggnog: Glycoside hydrolase family 28(COG5434)
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019428662.1)
• Pfam: Pectate lyase superfamily protein (PF12708.6)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;