| Id Trinity | TRINITY_DN48465_c2_g4_i6 |
|---|---|
| Name Transcript | Ll_transcript_364072 |
| Sequence | GTGTGCAAAAAAAGATCACAACCATTGATTTCAAGCATGTGAAAATCCTATAAAGGACATGACATTGTTCATTAGGAATATCAGTTGATAGAGAATGGCC AATAATTTGATCATTTCAGAGGAGAAATCACTGCCTAGGAGCATCCAAGAAATGTCCATAGATGGTGATGAACCACCACAACAATTTATAGTCAACAGAA ATAGCATTTGGTCTAAAGATACTTCAACAAATATTCAAATACCCATCATTGATCTAAGTCTTCTCTTATCATCAGAAGCTGAGCTAGACAAGTTAAGATC TGCTCTAAGCTCTGTTGGGTGCTTCCAGGCAATTGGTCATGGAATGTCAAGTTCATATCTTGAGAAAGTACGCCAAGTTGCAAAACAATTTTTTACACTG CCAGTTGAGGAGAAACAAAAGTATGCTAGACCTGTTGGTGAATCTGAAGGCTATGGGAGTGACAGGATAGTCTCCGAGAAGCAAGTACTTGACTGGTCCT ATCGCCTAAGTCTTCGAGTTTTGCCAACAGAAAAACGACGCCTTTCTCTTTGGCCGAAAAATCCTTCTGATTTTAGTGATACATTAGAGGAGTTTACGAC GAAAGTGAAGTCGATGATGGATTATCTTTCGAGAAGCATGGCGCGGTCACTGAATTTGGAAGAGGGTAGCTTCTTTGATCAGTTTGGAGAAAAATCATTA ATGCTAGCAAGGTTCAACTTCTATCCATGTTGTTCTAAACCTGATTTGGTTCTTGGTGTGAAACCTCATACAGATAGATCAGGAATCACGGTTCTATTGC AAGACACTGAAGTGGAAGGTCTTCAAATTCTGGTTGATGACACATGGGTCAATGTTCCTACAATTCATGATGCTCTTGTTGTCAATCTTGGTGATCAAAT GCAGGTACACAAGTCTCTTTCTCAACTATGTTTGATACATACACGTCACAATCGAGTCAGAATCCTCTTCGGTAGTGTTGTGAAAAAAACAAAAACAAAA TGTAATGACACTTATGTTTTTTTGTTTATGGCACTTTTACCCTTAAAACTAAAAGCAAAATCAACATTTCACTCTCCTGAAAGGATTCTGACTCATCACA ATCATCTTCATCTCTACATGTTAACTTTAACAAAGGTCTCATAACAATAAATAGTAGTCAAACTCGATCCGGACGTTAAACCGAAAGTCTCGTATTAGGT TCAAGCGATTAAACTGTCTGGTCTGATCGGGTAATTTAATACATAATTAATATTTTTTATCTATAAATATATAATTATGTATAAGTGTGAAATTTTATAT AATTAATAATTATATTGAATTATTAGAGCAATCTTCATTTTTTAATTTTTAAGTGAACAGTCTATTTTAGTTCCTGTGTTAATCTGGTTTAACCGGGTTT AGCACGGTCGAATCGTTATTTTCCCGATTCATAGCGGTCTAACTTTCACTTGTTTAAGTCGGTAAATCGAAGTTGTTTTTCAGTCCGGCCAGCGGTCAAA CCGGTTGGACCGTCTAGTACGGTCCGGTTCAAATAACACTCATAAATAGCATGTTGGGATGAAACCAAATTGAAGCCTTTTCTCTACAGAAAAAGTACAT TTTAACCAAATAAAAATAGTAAAATGGTGTCTGGGTTACATGTTTCCTTATTCAATTTGGATTACATTTTGCTAATTATTTTTTGGTTGATGTATATATG AATGTCCTTTGCTATTATACAGATAATGAGTAATGGAATATTCAAGAGTCCAATGCACAGGGTTGTGACAAACACAGAAAAGTTGAGGATGTCTGTGGCA ATGTTTAATGAGCCAGAACCAGAGAATGAAATTGGACCTGTGGAAGGCCTAATAGATGAGACAAGACCAAGGTTGTACAGAAATATTAAGAATTATGGTG ATATGTGCTACCAAGAGGGTAAGATAACACTTGGGATGATAAGAATTGAAGATAACTCTGATAAAAAATGAGACAATTTAATTTCATATTTCATTCCTCA ATGATAATGAAGATATACTATGTAGTTGGAATAAACATGTTTACTAGTTGGAATAAATATGTATGTCCTCGCTTTATTTGCTCCTAATAATCCATGTTTT TTGGTATTTACGTCTCAAATGCTCATAACATGAACTTAGAAATCATATTGGTCTTCCTTGCCATGATGAATGG BLAST |
| Tissue | pods |
| Gene name | LI_gene_161282; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_364072
| Blastp | Protein SRG1 from Arabidopsis with 38.76% of identity |
|---|---|
| Blastx | Protein SRG1 from Arabidopsis with 37.6% of identity |
| Eggnog | 2OGFe(II) oxygenase(COG3491) |
| Kegg | Link to kegg annotations (AT1G17020) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019452954.1) |
| Pfam | non-haem dioxygenase in morphine synthesis N-terminal (PF14226.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |