Ll_transcript_362844

• Id Trinity: TRINITY_DN48475_c2_g1_i2
• Name Transcript: Ll_transcript_362844
• Sequence: GCCGAATCATTCTGATTTTTCAATAAATGGAGCAAAAACCGACGACACCGGCGGAAGAAACGGTGGCGATTCCATCGTCCTCCGTGGTAGCCGACGAATC AAAACCTTCTTCTCTTTTTCCTCTTTTCTCGATACCTAATTCCTCATCTCTTCAGACTACAAATTCGGTTCCTCAATGGCTTTGCAACTCCAGCTTCAAC TCCGACGTTTCCCTCATAAACGACGCCGCCGCATCTCAACTCCACCACGAAACCGCCGAATATCCATCGCAAGACGACGACGGAGATAATGATGAGAAGC AACCGTTTCGTCCCTCGTACGAGATTTTGAAATCTTCGGAATCCGACGGAGAGAGAAGGGAGAGAGGGAAGAAGGATAAGAAGAGAAAGAAGAAGAAGCG GAAACATGAGAGAAGCGAACTTGATGGTTACGGTTCGAGAAAGTCTCGCGTTCGAGCTTGGGCTGATTCGGAGACTAACACTTCCAAAGATTATTACATT GATTCTCATGGCGATCCTGATAACCTCGCATTCGGAAGTATGTACAGAATGGATATTGCTCGGTACAAATCTTACAATCCTTCGAAACTATCTGGTCTAC TACATGTTCGTGGTTTGTATTCGTGGAACCAGACTGGCTCACTCTGGGAAAGAGATGGCGATGTTGATTCATTGGACAGTAAAATGAAGTCTGGTGGTCG TTATTGGTCTGGGAAGTATATTGCTTTGGAACGACATAAGAGCTTTAAGCGTGTTCGTCTTGTTACGCCAAAAATGTCTGCTGCTAGTGCTACGACGCAA AATGACTTCATACCTTTATCAGAGGTTGGGACATCTCATGGAGCTGTGGACAGTGATCCTGTCTCTGAAACTTCTGCAGCACTTGAGGAATCTTGGGAAG ATGAAATGTTGAACAAAACTCGGGAGTTCAACAAGCTGACAAGGGAGCACCCCCATGATGAAAAAGTTTGGTTAGATTTTGCAGAGTTCCAAGATAGGGT TTCAGGGATGCAACGACAGAAAGGTGCTCGCTTGCAAACGCTTGAAAAGAAGATTAGCATTCTGGAGAAGGCAGTTGAGCTTAACCCAGACAATGAAGAG CTGTTGCTTTGTCTTTTGAAATCTTATCAAAGGAGAGACAACTCAGATGTTTTAATTGGGAGATGGGAGACAATACTTTTGCGGCACTCTGGAAGTTACA GATTATGGAGAGAATTCTTGCACGTCGTTCAGAGAAACTTCTCCAGATTTAAGGTTTCAGAGATTAGGAAGATGTACACACATGCAATTGAAGCTTTATC TGCTTCATGCAGCAAGCACTCTAGGCAGGTTCACCATTTTTATGACCCTTCTTCATCGGATCCTGTCATTGTTCAGCTAGAACTTGGTCTTGTGGATATA TTTGTCAGTCTCTGCAGATTTGAGTGGCAGGCTGGTTATAGGGAATTGGCTACTGCTTTGTTTCAGGCAGAAATTGAGTTTAGTTTGTTTTGCCCACCTT TGCTCCTCACAGAACAGAGTAAGCAAAGACTGTTTGAGCATTTTTGGAATAGTGATGGTGCTAGAGTTGGAGAAGAAGGAGCTCTTGGTTGGTCCTCGTG GTTGGAGAAAGAGGAGGAAACTAGGCAGAGAATTATGAAGGAGGAGCTCTCACAAGAGAATGAAGCTGGTGGTTGGACTGGTTGGTCAGAACCATTTTCT AAAGATAAGGAGGGTATTATCGATGTTGAAAATGAAGCCAACAATGATTTGGTTCTGGAGGATATTCAAGATGAAGATGAACATAAAGATGTTGAGCCAG AAGTTGATACTGAAAGTTTGATGAAAATGCTAGGAATTGATGTCAATTCTGGGGATGGCAATGAAGTGAATGAAGTTTCAACCTGGATCAAATGGGCAGA GGAAGAGTCTTCTAGAGATTGTGATCAGTGGATGCCAATTCGTAGGAAATCAGGAACAACCTCTGCTAGTACTGGAGCTCATGAAACAGAAGAAGATGAG CATCTCTTGAGAACCATATTGTATGAAGATGTGAATGAATACCTGTTTTCCTTGAGCACAGCAGAGGCTCGGCTATCTTTGGTGTCCCAATTCATTGACT TCTATGGCGGGAAGATATCTCAATCGATTTGCTCAAACAGTTCGAGTTGGACAGAGAGTGTCCTTAGCTTGGAGGATCTGCCAGATTCCATGTTAGAGAA GTTGAAATGCATTCACGAAGTTTTAACACGAACACAAAGCAGTCCCATTGGTTTCAGTTTTGAATTCATATCAGGCAGTTTGTCTAAGAATGCTGGTATG ATGAATTTTCTAAGGAATGTTGTCCTGCTCTGTTTGTCTGTTTTTGCGCGTAATTACGTATTGGAAGAAGCTGTCCTTATTTCTGAAGAGCTTTATGTTA CAAAAATGAGTCCTTCTAACTCGATGGTTACACCATGTCGAGCTTTGGCGAAGTCTCTATTAAAAAGTGATCGACAGGATGTATTGCTATGTGGTGTATA TGCAAGGAGAGAGGCTAATTATGGCAACATTGATCTTGCAAGAAAAGTTTTCGATATGGCTTTGTTATCTGTGGATGGGCTTCCTGCGGAGCTACAGTCC AATGCTCCTCTTTTATATTTCTGGTATGCTGAGATGGAGCTTGCGAATAACTCCTATGACATTCGTGAATCTTCACATCGTGCAATACATATATTATCAT GCTTAGGAAGTGGTACGAAATACAGCCCATTTAAAAGTCAGGCATCAAGTTTGCAACTGCTTAGAGCCCATCAAGGGTTTAAAGAAAAAATGAGAACAGT ACGATCATCATGGATTCGTGGTATAATAGATGACCAGTCTGTATCTCTAATATGTTCAGCTGCATTGTTTGAGGAGCTCACCACTGGATGGGATGCAGGT GTTGAAGTTTTAAATCAAGCTTTTGCAACTGTGCTTCCAGATAGGAGAAGCCATAGCTATCAACTCGAATTTTTGTTTAACTATTACATAAGGATGCTTC AGAAACATCAGAGACAATCAAGTCTGGTGAAAGTCTGGGAATCAATTTCTCAGGGCCTCCAGATATATCCCTTCAGTCCAGATCTTCTTAAAGGTGTAGT GGAGGTTGGCCATTTGCACACTACATCTAATAAATTGCGGTGGATGGTAGATGACCTTTGTTACAAGAAACCATCTGTCCTTCTCTGGCTTTTTGCATTG TGCTATGAGATGTCTAGAGGTGGCACCCAACACAGAATCCGTGGGTTGTTTGAGAAGGCATTGAGTAACGATAGGCTTTGCAGCTCAGTTGTACTGTGGC GTTGCTACATTGCGTATGAATTGGACATTGCACATGATGCTTCTGCAGCTCGACGTATTTTCTTCCGAGCTATCCATTCTTGTCCCTGGTCAAAAAGGTT ATGGTTAGATGGGTTTCTGAAACTGAACTCTGTCCTGAATGCAAAAGAGCTATCGGATCTCCATGAAGTTATGGTGGATAAGGAACTGAATCTGAGAACT GATATTTATGAAATCCTTTTGCAAGAGTCATGATGACTTTTGCTCTCCCGTGCTGCCAGAATTTCGTTCCCGGGAGGGGGCAAGCATGGGTGCTGCCCCC TTACTATATCTTGTAAAATCCTGAGATAACTTTGATTTTATCCTTACATGACAAAGTTTTACATTGTCAATATGATATAATATTATGATTTTAATATTTA TTTTAATGAGGATGAATATGTTTGACTTTCAAAAATCCACACATGGAAGATTTTGGAGGGTTCGAGAAACCCTCCAAAACCTTCACATCTCCTTCATCCA ACTCCCAAACAAGGGGAAGGCTTTCCAAAGCCATCATTTCCCCTCCAAAACTTCACTTCCAGACAAAGCCTAAGGGGTGATAGGTTAAGTGATACATATT TGTGTATGAAGAAAATTCTTGCAGAGAGAGGCAGCTATATTGTGGATTTTCTTGGCTTGAATAAGAATGACTCCCATGAATGAAATGTATGGGTAGAAGA AAGATTCGTGAGGTGGGGCATACAGTTCATTTTACTTCTTTTCCTATTTTTACTAATTTAACAAATCAAATGTAGTGATATACATTTTTGGACAATAAAT T
• Tissue: pods
• Gene name: LI_gene_161372;
• Additional information: details;

Expression of Ll_transcript_362844

FPKM

• PAB: 1.7
• PNAB: 4.3
• PS1: 6.3
• PS2: 4.4
• PS3: 6.8
• PW1: 4.3
• PW2: 5.2
• PW3: 3.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_362844

• Blastp: Protein NRDE2 homolog from Homo with 25.37% of identity
• Blastx: Protein NRDE2 homolog from Homo with 25.02% of identity
• Eggnog: nrde-2 necessary for RNA interference, domain containing(ENOG410XPGD)
• Kegg: Link to kegg annotations (55051)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019430340.1)
• Pfam: NRDE-2, necessary for RNA interference (PF08424.9)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;